Browse Element(s) Details


Os.42377.1.S1_x_at

Description gb:NM_190716.1
DB_XREF= gi:34908515
GEN=P0679C12.28
TID=Os.42377.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42377 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.28 (P0679C12.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0679C12.28 (P0679C12.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6428011/11sorting nexin 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42377.1.S1_x_at--951--4471Chr01:37644854..37644878 (25 bp)
GCCTGTGGAGGAATCTAGTCCTGAA
LOC_Os01g64280
Os.42377.1.S1_x_at--866--5511Chr01:37644796..37644820 (25 bp)
GAAAACCATTTAGCAGAGGCACAGA
LOC_Os01g64280
Os.42377.1.S1_x_at--1066--6191Chr01:37644781..37644805 (25 bp)
GAGGCACAGAAACAAGCATTCCGTC
LOC_Os01g64280
Os.42377.1.S1_x_at--1112--5471Chr01:37644410..37644434 (25 bp)
GAACTTGGGCAATCTTTGGCGGACT
LOC_Os01g64280
Os.42377.1.S1_x_at--339--3671Chr01:37644397..37644421 (25 bp)
CTTTGGCGGACTTTGGTAAGGCTAT
LOC_Os01g64280
Os.42377.1.S1_x_at--544--4931Chr01:37644172..37644196 (25 bp)
GCAGACAACCTTCTCTTTAACTTTG
LOC_Os01g64280
Os.42377.1.S1_x_at--914--2811Chr01:37644135..37644159 (25 bp)
AAGATTATGTACGTGCTGTGCAGTC
LOC_Os01g64280
Os.42377.1.S1_x_at--299--5271Chr01:37643456..37643480 (25 bp)
GAATGAAGAGCTTGCACGTTTCCAA
LOC_Os01g64280
Os.42377.1.S1_x_at--90--2491Chr01:37643423..37643447 (25 bp)
AACAGCTGATATTGGATTCGCATTC
LOC_Os01g64280
Os.42377.1.S1_x_at--1103--6571Chr01:37643409..37643433 (25 bp)
GATTCGCATTCCATGAATTTGCCAA
LOC_Os01g64280
Os.42377.1.S1_x_at--143--71Chr01:37643359..37643383 (25 bp)
ATTGCTGATGCATGGCGAGGCGTCC
LOC_Os01g64280
Target Sequence 
GCCTGTGGAGGAATCTAGTCCTGAATATGAAAAGCTTAAAAATTACATATTTGAGCTAGAAAACCATTTAGCAGAGGCAC
AGAAACAAGCATTCCGTCTTGTGAAAAGACACCGAGAACTTGGGCAATCTTTGGCGGACTTTGGTAAGGCTATTAAGCTT
TTAGGTGCTTGCGAAGGGGACTCCTTGGAAAAAGTTTTTTCAGAAGTTGGATCAAAGTCAGAGATGTTATCAGTAAAGCT
GCAAAGAGAGGCAGACAACCTTCTCTTTAACTTTGAAGAGCCTTTGAAAGATTATGTACGTGCTGTGCAGTCAATAAAAT
TGACAGCAGACAGTGAGGAGGCTACAAAGAGGTTTGAGCACATAGTTGCAGTAATGAATGAAGAGCTTGCACGTTTCCAA
GAGCAGAAAACAGCTGATATTGGATTCGCATTCCATGAATTTGCCAAAGGCCAAGCAAAGTTAGCTAAAGATATTGCTGA
TGCATGGCGAGGCGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42377.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis