Browse Element(s) Details

Os.4292.1.S1_x_at

Description

gb:AK064427.1
DB_XREF= gi:32974445
TID=Os.4292.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-C09, full insert sequence.
FL= gb:AK064427.1 gb:AK119321.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g03940	4/11	Spastin, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g03880	OsAffx.4712.1.S1_at	11/11	6	+	1563911..1564192	hypothetical protein
LOC_Os06g03890	OsAffx.15250.1.S1_at	11/11	6	+	1564578..1565226	esterase, putative
LOC_Os06g03900	OsAffx.27449.1.S1_at	11/11	6	+	1571423..1572803	esterase, putative, expressed
LOC_Os06g03910	Os.4289.1.S1_at	11/11	6	+	1573604..1576094	hydrolase, NUDIX family protein, expressed
LOC_Os06g03920	Os.4290.1.S1_at	11/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03920	OsAffx.17234.1.S1_at	1/11	6	+	1579343..1580869	expressed protein
LOC_Os06g03930	Os.4291.1.S1_at	11/11	6	+	1580992..1584766	Cytochrome P450 family protein, expressed
LOC_Os06g03940	Os.4292.2.S1_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_x_at	11/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.45933.1.S1_at	8/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	Os.4292.1.S1_x_at	4/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03940	OsAffx.30727.1.S1_at	1/11	6	+	1587474..1595160	Spastin, putative, expressed
LOC_Os06g03950	OsAffx.15251.1.S1_at	11/11	6	+	1597468..1597776	hypothetical protein
LOC_Os06g03960	OsAffx.4714.1.S1_at	10/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03960	OsAffx.17408.1.S1_at	1/11	6	+	1598329..1600781	hypothetical protein
LOC_Os06g03970	Os.4294.1.S1_a_at	11/11	6	+	1604743..1611389	Leucine Rich Repeat family protein, expressed
LOC_Os06g03980	Os.24969.1.A1_at	11/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	OsAffx.1574.1.S1_at	1/11	6	+	1612665..1619184	expressed protein
LOC_Os06g03980	Os.50299.1.S1_at	1/11	6	+	1612665..1619184	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0000226	biological_process	microtubule cytoskeleton organization and biogenesis
GO:0009825	biological_process	multidimensional cell growth
GO:0009832	biological_process	cell wall biosynthesis (sensu Magnoliophyta)
GO:0010091	biological_process	trichome branching (sensu Magnoliophyta)
GO:0008352	cellular_component	katanin
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4292.1.S1_x_at--823--619	1	Chr06:1594534..1594558 (25 bp)	GAGGAAGCTGCCATGATGCCAATCA	LOC_Os06g03940
Os.4292.1.S1_x_at--872--317	1	Chr06:1594553..1594577 (25 bp)	CAATCAGAGAGCTTGGTCCACAAAA	LOC_Os06g03940
Os.4292.1.S1_x_at--162--663	1	Chr06:1594683..1594707 (25 bp)	GTTGCGGCCCCTGAAATACGAAGAT	LOC_Os06g03940
Os.4292.1.S1_x_at--1089--351	1	Chr06:1594719..1594743 (25 bp)	CATGACTGTGATTAGGCCAAGCCTG	LOC_Os06g03940
Os.4292.1.S1_x_at--84--563	1	Chr06:1594799..1595199 (25 bp)	GACACTAGACAATGGCCTATCTGAA	NONE
Os.4292.1.S1_x_at--72--971	1	Chr06:1595212..1595236 (25 bp)	TCAAATTCTTGAGATGCCATCACAA	NONE
Os.4292.1.S1_x_at--217--551	1	Chr06:1595245..1595269 (25 bp)	GAACACACGAGCGAACCATCAGTTG	NONE
Os.4292.1.S1_x_at--256--433	1	Chr06:1595260..1595559 (25 bp)	CCATCAGTTGATGCCCAGAATCCAG	NONE
Os.4292.1.S1_x_at--736--97	1	Chr06:1595684..1595708 (25 bp)	AGGAGCTAATCATGTCCCGGACGAA	NONE
Os.4292.1.S1_x_at--891--149	1	Chr06:1595735..1595759 (25 bp)	AGCAGCAGGTGGACGTTTACTCATC	NONE
Os.4292.1.S1_x_at--753--463	1	Chr06:1595787..1595811 (25 bp)	GCGATTTTTCGCAGCATCACGGAGA	NONE

Target Sequence

GAGGAAGCTGCCATGATGCCAATCAGAGAGCTTGGTCCACAAAATATTCTCACTATAAAAGCAAATCAGTTGCGGCCCCT
GAAATACGAAGATTTCAAGAAAGCCATGACTGTGATTAGGCCAAGCCTGCAGAAGAGCAAGTGGGACGAGCTAGAGAAAT
GGAACGAAGAATTTGGTTCAAGTTGACACTAGACAATGGCCTATCTGAAAGCCTGAAAAGATCAAATTCTTGAGATGCCA
TCACAACTGAAACTGAACACACGAGCGAACCATCAGTTGATGCCCAGAATCCAGATAAGCCATCTCATGATTGGAGAAGA
ATGATTGGTGGTGGCCAATTGGTGAGGCGACGAGGAGCTAATCATGTCCCGGACGAAGCCAGCGTCGCGATCGCCATGGC
AGCAGCAGCAGGTGGACGTTTACTCATCCGCATGGCCCATTTAGCGCCCCCATTTGCGATTTTTCGCAGCATCACGGAGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis