Browse Element(s) Details


Os.43688.1.S1_at

Description gb:NM_188077.1
DB_XREF= gi:34903237
TID=Os.43688.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43688 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1667011/11BSD domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16610OsAffx.9990.1.S1_x_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16610OsAffx.9990.1.S1_at11/111+9426733..9427525Plastocyanin-like domain containing protein
LOC_Os01g16620OsAffx.23277.2.S1_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.2.S1_x_at11/111+9428520..9432634expressed protein
LOC_Os01g16620OsAffx.23277.1.S1_at10/111+9428520..9432634expressed protein
LOC_Os01g16630OsAffx.22187.2.A1_at10/111+9435234..9436165hypothetical protein
LOC_Os01g16640Os.22454.1.S1_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16640Os.22454.1.S1_x_at11/111+9438358..9440994DSS1/SEM1 family protein, expressed
LOC_Os01g16650Os.247.1.S1_at11/111+9442463..9443344Ubiquitin-conjugating enzyme X, putative, expressed
LOC_Os01g16660Os.35093.1.A1_x_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660Os.35093.1.A1_at11/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.2.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_x_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.29842.3.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16660OsAffx.16831.1.S1_at1/111+9444566..9447565transposon protein, putative, unclassified, expressed
LOC_Os01g16670Os.43688.1.S1_at11/111+9451844..9453701BSD domain containing protein, expressed
LOC_Os01g16680Os.47508.1.A1_s_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680OsAffx.2475.1.S1_x_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16680Os.11892.1.S1_at11/111+9466908..9471965DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os01g16690NANA1+9477984..9480122retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43688.1.S1_at--260--8091Chr01:9453113..9453137 (25 bp)
GGAGCGGATACACCTGATGTTTCAG
LOC_Os01g16670
Os.43688.1.S1_at--958--1431Chr01:9453144..9453168 (25 bp)
AGAAGACTACTCTGGCAGCTGAGAA
LOC_Os01g16670
Os.43688.1.S1_at--583--5251Chr01:9453182..9453206 (25 bp)
GAATCCAAGGATGAAGTAGCAGCAC
LOC_Os01g16670
Os.43688.1.S1_at--680--6951Chr01:9453197..9453221 (25 bp)
GTAGCAGCACCAAAGTCGAGCAATG
LOC_Os01g16670
Os.43688.1.S1_at--229--5951Chr01:9453236..9453260 (25 bp)
GAGAAAATCGACTCGTCTAAGGAGA
LOC_Os01g16670
Os.43688.1.S1_at--917--7071Chr01:9453367..9453391 (25 bp)
GTCAAGCCCTCCTAGCAAAGCTGAG
LOC_Os01g16670
Os.43688.1.S1_at--314--2431Chr01:9453459..9453483 (25 bp)
AAAACCTCTGCATCACTTAATTTAG
LOC_Os01g16670
Os.43688.1.S1_at--647--3311Chr01:9453551..9453575 (25 bp)
CACAGTGCTGGTTGACATATGATGT
LOC_Os01g16670
Os.43688.1.S1_at--1103--5211Chr01:9453576..9453600 (25 bp)
GAATATTGGATGGTCACTAGTCATT
LOC_Os01g16670
Os.43688.1.S1_at--129--7911Chr01:9453613..9453637 (25 bp)
GGTTGTTTGTTTGATTACTGCCCCT
LOC_Os01g16670
Os.43688.1.S1_at--401--1991Chr01:9453629..9453653 (25 bp)
ACTGCCCCTGTAAAATTTTCAATAG
LOC_Os01g16670
Target Sequence 
GGAGCGGATACACCTGATGTTTCAGANGACAAGAAGACTACTCTGGCAGCTGAGAAGGATGGCAATGGCGAATCCAAGGA
TGAAGTAGCAGCACCAAAGTCGAGCAATGACATGGGGCGAGAAGAGAAAATCGACTCGTCTAAGGAGAGTGAATTCTCAG
CGGCNTCTCCTCCATCTGCACAGGAGGAAGATCTTAGCTGGGAGGAGATCGAAGATGTTGGTGATGAAGATGAGAAGAAA
AAACCGATTCCACGGTCAAGCCCTCCTAGCAAAGCTGAGGATATCAGAAAACGATTTAGTTCTGTCGAAGATGATGAAGA
GCTGAGTTGGGATATTGATGAGTGAAAAAACCTCTGCATCACTTAATTTAGTGGTCTGAAAGNTGTCAGCTTAAAATGNT
ATCACACTTTTTTNCACTTTGGTGTCAATTGGGATTTNCACAGTGCTGGTTGACATATGATGTGAATATTGGATGGTCAC
TAGTCATTCAAATTCAATGGGGTTGTTTGTTTGATTACTGCCCCTGTAAAATTTTCAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43688.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis