Browse Element(s) Details


Os.43805.1.S1_at

Description gb:NM_187854.1
DB_XREF= gi:34902791
TID=Os.43805.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.43805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) unnamed protein product (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43805.1.S1_at--318--6511Chr01:8283841..8283922 (25 bp)
GATTTGACAAGGCTTGCACAAGATT
LOC_Os01g14820
Os.43805.1.S1_at--835--511Chr01:8285297..8285321 (25 bp)
ATCGACTGGGCTCTGAAGGTCCTGG
LOC_Os01g14820
Os.43805.1.S1_at--467--4071Chr01:8285299..8285323 (25 bp)
CGACTGGGCTCTGAAGGTCCTGGGT
LOC_Os01g14820
Os.43805.1.S1_at--222--9271Chr01:8285316..8285340 (25 bp)
TCCTGGGTTCCGCAAAGGCCACTGC
LOC_Os01g14820
Os.43805.1.S1_at--134--2311Chr01:8285329..8285353 (25 bp)
AAAGGCCACTGCTTGGTATTCTCCT
LOC_Os01g14820
Os.43805.1.S1_at--760--2951Chr01:8285330..8285354 (25 bp)
AAGGCCACTGCTTGGTATTCTCCTA
LOC_Os01g14820
Os.43805.1.S1_at--24--891Chr01:8285331..8285355 (25 bp)
AGGCCACTGCTTGGTATTCTCCTAA
LOC_Os01g14820
Os.43805.1.S1_at--926--8431Chr01:8285332..8285356 (25 bp)
GGCCACTGCTTGGTATTCTCCTAAG
LOC_Os01g14820
Os.43805.1.S1_at--204--4371Chr01:8285334..8285358 (25 bp)
CCACTGCTTGGTATTCTCCTAAGCA
LOC_Os01g14820
Os.43805.1.S1_at--747--1971Chr01:8285336..8285360 (25 bp)
ACTGCTTGGTATTCTCCTAAGCATC
LOC_Os01g14820
Os.43805.1.S1_at--920--4931Chr01:8285339..8285363 (25 bp)
GCTTGGTATTCTCCTAAGCATCAGG
LOC_Os01g14820
Target Sequence 
GATTTGACAAGGCTTGCACAAGATTTCTTCTTCTCTCGACGCCCTGATTTAGAGACATTCTGTGATGTTTGTCCTGATGT
GATTGTTTCTCTTCAACAACAGATAGTTGGACCCTTCAGCTTTCGTGTTGAATCCACAGTTACCATTGACCCTAAAAAAC
AAGACCATTTCGTTCGTGTGGACGACTCAGTTTTTGCAATCGACTGGGCTCTGAAGGTCCTGGGTTCCGCAAAGGCCACT
GCTTGGTATTCTCCTAAGCATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis