Browse Element(s) Details


Os.43898.1.S1_x_at

Description gb:CB646700
DB_XREF= gi:29641693
DB_XREF=OSJNEb09F02.r
CLONE=OSJNEb09F02
TID=Os.43898.1
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.43898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative DEADDEAH box RNA helicase protein (OJ1384D03.13), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g018309/11DEAD/DEAH box helicase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g01760Os.14607.1.S1_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.1.S1_x_at11/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01760Os.14607.2.S1_x_at5/113+457622..460344exostosin family protein, putative, expressed
LOC_Os03g01770Os.24310.1.A1_a_at11/113+461280..463088rhodanese, putative, expressed
LOC_Os03g01780OsAffx.22272.1.S1_at11/113+463616..464817transposon protein, putative, unclassified
LOC_Os03g01790OsAffx.24937.1.S1_at11/113+466834..470785Zinc finger, C3HC4 type family protein
LOC_Os03g01800Os.18421.1.S1_a_at11/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01800Os.46631.1.S1_x_at1/113+470997..472438Glycosyl hydrolases family 16 protein, expressed
LOC_Os03g01810Os.47563.1.A1_at11/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01810Os.30537.2.S1_at6/113+476111..477906SNF7 family protein, expressed
LOC_Os03g01820Os.30537.1.S1_at11/113+478264..480200Sterol desaturase family protein, expressed
LOC_Os03g01830Os.26376.2.S1_at10/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01830Os.43898.1.S1_x_at9/113+484267..487525DEAD/DEAH box helicase, putative, expressed
LOC_Os03g01840Os.26376.1.S1_at11/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01840OsAffx.24307.1.S1_at10/113+487103..488659transposon protein, putative, unclassified, expressed
LOC_Os03g01850Os.11723.4.S1_x_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.1.S1_s_at11/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01850Os.11723.2.S1_s_at8/113+489816..493129Cell division control protein 2 homolog 1, putative, expressed
LOC_Os03g01860OsAffx.3109.1.S1_at11/113+497147..498140hypothetical protein
LOC_Os03g01870Os.34712.1.S1_at11/113+502353..503623NAC-domain containing protein 21/22, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.43898.1.S1_x_at--918--3231Chr03:486852..486876 (25 bp)
CAAGCAGACGGCTGACTCGATGTTC
LOC_Os03g01830
Os.43898.1.S1_x_at--166--2011Chr03:486866..486890 (25 bp)
ACTCGATGTTCCTGGTGTGCACAGA
LOC_Os03g01830
Os.43898.1.S1_x_at--172--6211Chr03:486990..487014 (25 bp)
GAGGCATCGACTTTGCGAACGTGAA
LOC_Os03g01830
Os.43898.1.S1_x_at--97--5431Chr03:487012..487036 (25 bp)
GAACCACGTGGTGCTGTTCGACTAC
LOC_Os03g01830
Os.43898.1.S1_x_at--882--6011Chr03:487157..487181 (25 bp)
GAGAGGAACATCAAGGGCCACCCGC
LOC_Os03g01830
Os.43898.1.S1_x_at--770--771Chr03:487188..487211 (24 bp)
ATGTGCCATGCGTCTAGTCCTAGAG
LOC_Os03g01830
Os.43898.1.S1_x_at--555--5911NONE
GAGCTCTACAGAGCATAGACAGTTT
NONE
Os.43898.1.S1_x_at--280--10031NONE
TAGACAGTTTCAGGTCAAGTTTGTG
NONE
Os.43898.1.S1_x_at--991--5211Chr03:487337..487361 (25 bp)
GAATTAGCATCTGTCTGTCTGTTTT
LOC_Os03g01830
Os.43898.1.S1_x_at--1145--2231Chr03:487414..487438 (25 bp)
AAATTTCAGTCGCTGACCAACTCAC
LOC_Os03g01830
Os.43898.1.S1_x_at--47--2551Chr03:487432..487456 (25 bp)
AACTCACAAGTGGTGCAGCTGCTGC
LOC_Os03g01830
Target Sequence 
CAAGCAGACGGCTGACTCGATGTTCCTGGTGTGCACAGATAGGGCGTCGCGAGGCATCGACTTTGCGAACGTGAACCACG
TGGTGCTGTTCGACTACCCGCGCGACCCGAGTGAGTACGTGCGGCGCGTCGGCAGGACGGCCCGCGGCGCGTCGGGCAAC
GGCAAGGCGTTCGTGTTCGCGGTGGGGAAGCAGGTGTCCCTCGCCAGGAGGGTGATGGAGAGGAACATCAAGGGCCACCC
GCTGCACGATGTGCCATGCGTCTAGTCCTAGAGAGAGCTCTACAGAGCATAGACAGTTTCAGGTCAAGTTTGTGCTAGCA
TACATAGCACCATCTAATATTGATGTAGATAGGGTTTGTGAAACCGGNTTTTGATGCATACACATATGCTGGTCGAGTGA
ATTAGCATCTGTCTGTCTGTTTTAGAATGGTGATGCATATTGGTTCATACATACATTCATAGNGNTAGTAGTAGTAAATT
TCAGTCGCTGACCAACTCACAAGTGGTGCAGCTGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.43898.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis