Browse Element(s) Details

Os.44324.1.A1_at

Description

gb:CF322815
DB_XREF= gi:33793855
DB_XREF=HDN--02-C10.g1
CLONE=HDN--02-C10
TID=Os.44324.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.44324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (OSJNBa0061L20.19), mRNA
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g08450	11/11	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os07g13010	4/11	Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500	3/11	Ulp1 protease family, C-terminal catalytic domain containing protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g08420	Os.12648.1.S1_at	11/11	9	+	4381994..4385627	Protein kinase G11A, putative, expressed
LOC_Os09g08430	Os.9941.1.S1_at	11/11	9	+	4389880..4392872	60S ribosomal protein L17, putative, expressed
LOC_Os09g08440	OsAffx.25952.1.S1_s_at	2/11	9	+	4400212..4406611	MtN3/saliva family protein
LOC_Os09g08440	OsAffx.29755.5.S1_x_at	1/11	9	+	4400212..4406611	MtN3/saliva family protein
LOC_Os09g08450	Os.44324.1.A1_at	11/11	9	+	4407658..4410656	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450	OsAffx.29755.3.S1_x_at	7/11	9	+	4407658..4410656	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450	OsAffx.29755.4.S1_x_at	6/11	9	+	4407658..4410656	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450	OsAffx.29755.3.S1_at	5/11	9	+	4407658..4410656	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08450	OsAffx.29755.2.S1_x_at	4/11	9	+	4407658..4410656	Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os09g08460	OsAffx.30941.9.S1_x_at	9/11	9	+	4411239..4416051	transposon protein, putative, unclassified
LOC_Os09g08460	OsAffx.30941.5.S1_x_at	9/11	9	+	4411239..4416051	transposon protein, putative, unclassified
LOC_Os09g08460	OsAffx.30941.2.S1_x_at	7/11	9	+	4411239..4416051	transposon protein, putative, unclassified
LOC_Os09g08460	OsAffx.30941.1.S1_x_at	6/11	9	+	4411239..4416051	transposon protein, putative, unclassified
LOC_Os09g08470	Os.51634.1.S1_at	2/11	9	+	4419207..4425072	retrotransposon protein, putative, unclassified, expressed
LOC_Os09g08480	OsAffx.6208.1.S1_at	11/11	9	+	4425809..4427345	expressed protein
LOC_Os09g08490	OsAffx.29764.1.S1_x_at	11/11	9	+	4428270..4428673	nodulin MtN3 protein, putative
LOC_Os09g08490	OsAffx.6203.1.S1_x_at	1/11	9	+	4428270..4428673	nodulin MtN3 protein, putative
LOC_Os09g08500	OsAffx.20858.1.S1_x_at	10/11	9	+	4435298..4437641	hypothetical protein
LOC_Os09g08500	OsAffx.20858.4.S1_x_at	7/11	9	+	4435298..4437641	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.44324.1.A1_at--944--71	7	Chr09:4410205..4410229 (25 bp)	ATGATTGCGGAATCTACGCTATGAA	LOC_Os09g08450
Os.44324.1.A1_at--791--851	6	Chr09:4410235..4410259 (25 bp)	TGGAATGGTGGAACCCAAGGATGCA	LOC_Os09g08450
Os.44324.1.A1_at--490--585	6	Chr09:4410277..4410301 (25 bp)	GACCAGAATATATCCCAAACATGAG	LOC_Os09g08450
Os.44324.1.A1_at--788--901	6	Chr09:4410311..4410335 (25 bp)	TGCAAATGACCTATTGTTCTCAGAA	LOC_Os09g08450
Os.44324.1.A1_at--827--927	2	Chr09:4410424..4410448 (25 bp)	TCCTGTTTTTGTTTGTGTACCAACA	LOC_Os09g08450
Os.44324.1.A1_at--1158--655	4	Chr09:4410449..4410473 (25 bp)	GATTACACAATCCTGTTTTTTCTGT	LOC_Os09g08450
Os.44324.1.A1_at--936--387	4	Chr09:4410461..4410485 (25 bp)	CTGTTTTTTCTGTAAAGCCCATGAG	LOC_Os09g08450
Os.44324.1.A1_at--868--755	6	Chr09:4410489..4410513 (25 bp)	GGGCCACACACTACCTGGTAGTAAG	LOC_Os09g08450
Os.44324.1.A1_at--739--17	6	Chr09:4410529..4410553 (25 bp)	ATTTTCTGTTTTTTCAAGCCCATGC	LOC_Os09g08450
Os.44324.1.A1_at--297--1051	6	Chr09:4410541..4410565 (25 bp)	TTCAAGCCCATGCAGTTTGGGTTTA	LOC_Os09g08450
Os.44324.1.A1_at--776--1023	1	Chr09:4410556..4410580 (25 bp)	TTTGGGTTTATGTGAGTCCTCAACT	LOC_Os09g08450

Target Sequence

ATGATTGCGGAATCTACGCTATGAAGTGTATGGAATGGTGGAACCCAAGGATGCACTTGAAAGATATGATCAGACCAGAA
TATATCCCAAACATGAGGAAGCAAATTGCAAATGACCTATTGTTCTCAGAANACAATTCACAAGAAGAAGCAAAAATNCT
ANCTAGAAGCTTCAATCCAACAAAGCATGGAAAATANGCAAGGCAACAGTGAAATAAACTCCTGTTTTTGTTTGTGTACC
AACAGATTACACAATCCTGTTTTTTCTGTAAAGCCCATGAGATGGGGCCACACACTACCTGGTAGTAAGAGAGAGAGATG
TCATATTTTCTGTTTTTTCAAGCCCATGCAGTTTGGGTTTATGTGAGTCCTCAACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis