Browse Element(s) Details


Os.45933.1.S1_at

Description gb:NM_185499.1
DB_XREF= gi:34898083
TID=Os.45933.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F17K2 genomic sequence; hypothetical protein (AC003680) (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) Similar to Arabidopsis thaliana chromosome II BAC F17K2 genomic sequence; hypothetical protein (AC003680) (Gene), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g039408/11Spastin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g03880OsAffx.4712.1.S1_at11/116+1563911..1564192hypothetical protein
LOC_Os06g03890OsAffx.15250.1.S1_at11/116+1564578..1565226esterase, putative
LOC_Os06g03900OsAffx.27449.1.S1_at11/116+1571423..1572803esterase, putative, expressed
LOC_Os06g03910Os.4289.1.S1_at11/116+1573604..1576094hydrolase, NUDIX family protein, expressed
LOC_Os06g03920Os.4290.1.S1_at11/116+1579343..1580869expressed protein
LOC_Os06g03920OsAffx.17234.1.S1_at1/116+1579343..1580869expressed protein
LOC_Os06g03930Os.4291.1.S1_at11/116+1580992..1584766Cytochrome P450 family protein, expressed
LOC_Os06g03940Os.4292.2.S1_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_x_at11/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.45933.1.S1_at8/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940Os.4292.1.S1_x_at4/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03940OsAffx.30727.1.S1_at1/116+1587474..1595160Spastin, putative, expressed
LOC_Os06g03950OsAffx.15251.1.S1_at11/116+1597468..1597776hypothetical protein
LOC_Os06g03960OsAffx.4714.1.S1_at10/116+1598329..1600781hypothetical protein
LOC_Os06g03960OsAffx.17408.1.S1_at1/116+1598329..1600781hypothetical protein
LOC_Os06g03970Os.4294.1.S1_a_at11/116+1604743..1611389Leucine Rich Repeat family protein, expressed
LOC_Os06g03980Os.24969.1.A1_at11/116+1612665..1619184expressed protein
LOC_Os06g03980OsAffx.1574.1.S1_at1/116+1612665..1619184expressed protein
LOC_Os06g03980Os.50299.1.S1_at1/116+1612665..1619184expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0009825biological_processmultidimensional cell growth
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0008352cellular_componentkatanin
GO:0005524molecular_functionATP binding
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45933.1.S1_at--20--3571NONE
CATCAAAGTGGATTGATAGTGTCAT
NONE
Os.45933.1.S1_at--753--2711Chr06:1594592..1594616 (25 bp)
AAGCAAATCAGGTATTTCGAGTTAC
LOC_Os06g03940
Os.45933.1.S1_at--1131--391Chr06:1594598..1594622 (25 bp)
ATCAGGTATTTCGAGTTACATCTTC
LOC_Os06g03940
Os.45933.1.S1_at--590--1011Chr06:1594601..1594625 (25 bp)
AGGTATTTCGAGTTACATCTTCATA
LOC_Os06g03940
Os.45933.1.S1_at--780--10191Chr06:1594604..1594628 (25 bp)
TATTTCGAGTTACATCTTCATACAG
LOC_Os06g03940
Os.45933.1.S1_at--850--10611NONE
TTCGAGTTACATCTTCATACAGTTT
NONE
Os.45933.1.S1_at--626--6071Chr06:1594610..1594688 (25 bp)
GAGTTACATCTTCATACAGTTTGCG
LOC_Os06g03940
Os.45933.1.S1_at--8--6771Chr06:1594612..1594690 (25 bp)
GTTACATCTTCATACAGTTTGCGGC
LOC_Os06g03940
Os.45933.1.S1_at--1--9891Chr06:1594614..1594692 (25 bp)
TACATCTTCATACAGTTTGCGGCCC
LOC_Os06g03940
Os.45933.1.S1_at--145--431NONE
ATCTTCATACAGTTTGCGGCCCCTG
NONE
Os.45933.1.S1_at--32--10551Chr06:1594620..1594698 (25 bp)
TTCATACAGTTTGCGGCCCCTGAAA
LOC_Os06g03940
Target Sequence 
CATCAAAGTGGATTGATAGTGTCATGTCAGCAAGGTTAGCTAATGAGAATGATGCTAGCAGGCGGTTGAAATCTGAATTT
CTTATCCAGTTTGATGGGGTCACTTCAAACCCTGATGATCTTGTTATTGTTATAGGTGCTACCAATAAGCCACAAGAGCT
GGATGATGCTGTTCTCCGTAGACTGGTAAAGAGAATATATGTGCCATTACCTGATCCAAATGTCCGAAGATTACTGCTGA
AAACTCAGCTCAAAGGACAATCATTCAAATTATCCAGATATTCCGGGAGTGATCTGAGAGCATTGTGTGAGGAAGCTGCC
ATGATGCCAATCAGAGAGCTTGGTCCACAAAATATTCTCACTATAAAAGCAAATCAGGTATTTCGAGTTACATCTTCATA
CAGTTTGCGGCCCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis