Browse Element(s) Details


Os.45955.1.S1_at

Description gb:CF323233
DB_XREF= gi:33794701
DB_XREF=HDN--03-E18.g1
CLONE=HDN--03-E18
TID=Os.45955.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45955 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Skp1(S-phase kinase-associated protein 1) (OJ1339_F05.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4326011/11Skp1 family, dimerisation domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g43200OsAffx.21308.1.S1_at4/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200OsAffx.21308.2.S1_x_at2/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43200Os.41653.1.S1_x_at1/117+25885812..25892367retrotransposon protein, putative, LINE subclass
LOC_Os07g43210OsAffx.28883.1.S1_at10/117+25893217..25893711hypothetical protein
LOC_Os07g43220OsAffx.9082.1.S1_at11/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43220OsAffx.21309.1.S1_x_at1/117+25896220..25896885Skp1 family, tetramerisation domain containing protein
LOC_Os07g43230OsAffx.16692.1.S1_at11/117+25900257..25901042Skp1 family, tetramerisation domain containing protein
LOC_Os07g43240Os.9982.1.S1_at9/117+25902941..25903886Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43250Os.9531.1.S1_at11/117+25905959..25906801Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43260Os.45955.1.S1_at11/117+25913067..25913789Skp1 family, dimerisation domain containing protein, expressed
LOC_Os07g43270OsAffx.28884.1.S1_at11/117+25916690..25917693Skp1 family, dimerisation domain containing protein
LOC_Os07g43290Os.9342.1.S1_at11/117+25918985..25921176Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g43300OsAffx.28886.1.S1_at10/117+25925395..25927053hypothetical protein
LOC_Os07g43310Os.37786.1.S1_at11/117+25928589..25929668Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os07g43316Os.36427.2.S1_x_at11/117+25931353..25934831expressed protein
LOC_Os07g43316Os.36427.2.S1_at11/117+25931353..25934831expressed protein
LOC_Os07g43322Os.32430.1.S1_at11/117+25935223..25938682expressed protein
LOC_Os07g43322OsAffx.16693.1.S1_x_at11/117+25935223..25938682expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45955.1.S1_at--88--4071Chr07:25913203..25913227 (25 bp)
CGAGGCAGTCCACGACCATCGGGCA
LOC_Os07g43260
Os.45955.1.S1_at--435--5851Chr07:25913216..25913240 (25 bp)
GACCATCGGGCACATGATCGACGAC
LOC_Os07g43260
Os.45955.1.S1_at--313--5791Chr07:25913235..25913259 (25 bp)
GACGACGACTGCACCAGGGAAGCCG
LOC_Os07g43260
Os.45955.1.S1_at--373--5791Chr07:25913343..25913367 (25 bp)
GACGACGAGAAAGCGGCGCTCGACA
LOC_Os07g43260
Os.45955.1.S1_at--13--8391Chr07:25913357..25913381 (25 bp)
GGCGCTCGACAAGTTTGACAAGGAC
LOC_Os07g43260
Os.45955.1.S1_at--854--8951Chr07:25913372..25913396 (25 bp)
TGACAAGGACTTCATCGGCGAGCTG
LOC_Os07g43260
Os.45955.1.S1_at--140--4611Chr07:25913389..25913413 (25 bp)
GCGAGCTGGACGGTGACAAGGCCTT
LOC_Os07g43260
Os.45955.1.S1_at--1039--4471Chr07:25913589..25913613 (25 bp)
GCCTGGGCCTTCTGAGGAGCACGCA
LOC_Os07g43260
Os.45955.1.S1_at--645--5931Chr07:25913605..25913629 (25 bp)
GAGCACGCACCTGCCGCGTAATTGT
LOC_Os07g43260
Os.45955.1.S1_at--297--9171Chr07:25913616..25913640 (25 bp)
TGCCGCGTAATTGTTCTCGTAGTTG
LOC_Os07g43260
Os.45955.1.S1_at--622--10572Chr07:25913629..25913653 (25 bp)
TTCTCGTAGTTGTGTGTTGTGTCTC
LOC_Os07g43260
Target Sequence 
CGAGGCAGTCCACGACCATCGGGCACATGATCGACGACGACTGCACCAGGGAAGCCGTCCCGCTCCCCAACGTCGACTCT
AAGACCCTCGAGAAGGTGATCGAGTACTTCGACGAGCACGCCAACAACAAGGCCGACACCGACGACGAGAAAGCGGCGCT
CGACAAGTTTGACAAGGACTTCATCGGCGAGCTGGACGGTGACAAGGCCTTCCTCTTCCACGTCACCATGGCCGCCAACT
ACCTCCACGCCCAAGGACTCCTCGACCTCACCACCCAGTGCATCGCCGACACCATCAAGGGCAAGACCCCCGAGGAGATC
CGCACGGCCTTCAACATCGCGTACGACCTCACCGAGGAGGACCAGGAGGAGATCAAGGAGGAGGANGCCTGGGCCTTCTG
AGGAGCACGCACCTGCCGCGTAATTGTTCTCGTAGTTGTGTGTTGTGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45955.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis