Browse Element(s) Details


Os.45986.1.A1_at

Description gb:NM_190714.1
DB_XREF= gi:34908511
GEN=P0679C12.26
TID=Os.45986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45986 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.26 (P0679C12.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0679C12.26 (P0679C12.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g642625/11hydrolase, alpha/beta fold family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed
LOC_Os01g64320OsAffx.6388.1.S1_x_at5/111+37664961..37665347hypothetical protein
LOC_Os01g64320OsAffx.6388.1.S1_at4/111+37664961..37665347hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45986.1.A1_at--547--7251Chr01:37640832..37640853 (22 bp)
GTCCGCTGATCTTCCCAAACAGCTT
LOC_Os01g64262
Os.45986.1.A1_at--110--4751NONE
GCTGATCTTCCCAAACAGCTTGGAC
NONE
Os.45986.1.A1_at--274--8851NONE
TGATCTTCCCAAACAGCTTGGACAA
NONE
Os.45986.1.A1_at--1141--6391NONE
GATCTTCCCAAACAGCTTGGACAAA
NONE
Os.45986.1.A1_at--122--431NONE
ATCTTCCCAAACAGCTTGGACAAAC
NONE
Os.45986.1.A1_at--601--10851Chr01:37640179..37640203 (25 bp)
TTGGACAAACACCTTTAGAAGGTTG
LOC_Os01g64262
Os.45986.1.A1_at--483--10011Chr01:37640164..37640188 (25 bp)
TAGAAGGTTGGTTTCCTGATAATTA
LOC_Os01g64262
Os.45986.1.A1_at--979--7911Chr01:37640159..37640183 (25 bp)
GGTTGGTTTCCTGATAATTATGACA
LOC_Os01g64262
Os.45986.1.A1_at--350--3131Chr01:37640144..37640168 (25 bp)
AATTATGACAGGATGCTCTGCCAGG
LOC_Os01g64262
Os.45986.1.A1_at--1075--4411NONE
GCCAGGAAATTCTTTGGGTGCTTGA
NONE
Os.45986.1.A1_at--993--4331NONE
CCAGGAAATTCTTTGGGTGCTTGAT
NONE
Target Sequence 
GTCCGCTGATCTTCCCAAACAGCTTGGACAAACACCTTTAGAAGGTTGGTTTCCTGATAATTATGACAGGATGCTCTGCC
AGGAAATTCTTTGGGTGCTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45986.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis