Browse Element(s) Details


Os.45992.1.S1_at

Description gb:NM_191466.1
DB_XREF= gi:34910015
GEN=P0413G02.9
TID=Os.45992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.45992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0413G02.9 (P0413G02.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0413G02.9 (P0413G02.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5686011/11WD-repeat protein 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56820Os.47987.1.S1_at11/111+33141959..33146300expressed protein
LOC_Os01g56830OsAffx.24046.7.S1_x_at9/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.3.S1_x_at6/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.2.S1_x_at4/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56830OsAffx.24046.5.S1_x_at3/111+33149073..33151356hAT family dimerisation domain containing protein
LOC_Os01g56840OsAffx.11628.1.S1_x_at11/111+33157695..33158666expressed protein
LOC_Os01g56840OsAffx.11628.2.S1_x_at6/111+33157695..33158666expressed protein
LOC_Os01g56850Os.11659.1.S1_at9/111+33163115..33164962expressed protein
LOC_Os01g56850OsAffx.11628.1.S1_x_at1/111+33163115..33164962expressed protein
LOC_Os01g56860Os.45992.1.S1_at11/111+33166255..33169237WD-repeat protein 13, putative, expressed
LOC_Os01g56870Os.52721.1.S1_at10/111+33169562..33174732expressed protein
LOC_Os01g56880Os.15904.1.S1_at11/111+33175084..33179387expressed protein
LOC_Os01g56890Os.8123.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56890OsAffx.11629.1.S1_at11/111+33182235..33184933expressed protein
LOC_Os01g56900Os.10706.1.S1_a_at11/111+33187802..33190344expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0007186biological_processG-protein coupled receptor protein signaling pathway
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
GO:0004871molecular_functionsignal transducer activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45992.1.S1_at--976--1171Chr01:33167491..33167515 (25 bp)
AGTACATAGCTTCGTGCTCCATGGA
LOC_Os01g56860
Os.45992.1.S1_at--515--2311Chr01:33167438..33167462 (25 bp)
AAAGGCACTTGTATCAGGGTTGTAT
LOC_Os01g56860
Os.45992.1.S1_at--147--7691Chr01:33167410..33167434 (25 bp)
GGGTTTCTTCCCAGCTATGTATCTG
LOC_Os01g56860
Os.45992.1.S1_at--100--10131Chr01:33167398..33167419 (22 bp)
TATGTATCTGCTTTCATCCTGTGAA
LOC_Os01g56860
Os.45992.1.S1_at--730--7111Chr01:33166867..33166891 (25 bp)
GTCAGCAAGCTTACCTTTGATGATG
LOC_Os01g56860
Os.45992.1.S1_at--55--4891Chr01:33166834..33166858 (25 bp)
GCTTTGGATGTTGATCACACTGGAC
LOC_Os01g56860
Os.45992.1.S1_at--1118--2171Chr01:33166818..33166842 (25 bp)
ACACTGGACAACTTATTTTTGCTGG
LOC_Os01g56860
Os.45992.1.S1_at--990--8091Chr01:33166711..33166817 (25 bp)
GGACGCTCAGGGTTGCATATATACT
LOC_Os01g56860
Os.45992.1.S1_at--431--7331Chr01:33166680..33166704 (25 bp)
GTGAATTCACACACGGGTTCATTAT
LOC_Os01g56860
Os.45992.1.S1_at--47--2271Chr01:33166623..33166647 (25 bp)
AAATCTCCTGTTACAACCATCCAAT
LOC_Os01g56860
Os.45992.1.S1_at--180--4351Chr01:33166569..33166593 (25 bp)
CCAGTCCTCCTTTCTTGTGTTCAAA
LOC_Os01g56860
Target Sequence 
AGTACATAGCTTCGTGCTCCATGGATAAAACTATGAGAGTATGGGAGATCTCAAAAGGCACTTGTATCAGGGTTGTATAT
GGGGTTTCTTCCCAGCTATGTATCTGCTTTCATCCTGTGAATAATAATTTACTGTTAGTTGGCAATGCAAACAGGGAAAT
CAATGCCATTAATTTTAGCACTGGGAGAATAGTCAGCAAGCTTACCTTTGATGATGCGGTTACAGCTTTGGATGTTGATC
ACACTGGACAACTTATTTTTGCTGGGGACGCTCAGGGTTGCATATATACTGTTAGTGTGAATTCACACACGGGTTCATTA
TCTAGAACTCATAAGAACAAGAGCAATAAAAGCAAATCTCCTGTTACAACCATCCAATACCGCACCTTCTCTCTGGTGGC
ACGTTGCCCAGTCCTCCTTTCTTGTGTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis