Browse Element(s) Details


Os.4610.1.S1_at

Description gb:L34039.1
DB_XREF= gi:601870
TID=Os.4610.1
CNT=33
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.4610 (NCBI UniGene Cluster)
UG_TITLE=Manganese superoxide dismutase (rmsod1) mRNA, complete cds
DEF=Oryza sativa manganese superoxide dismutase (rmsod2) mRNA, complete cds.
FL= gb:AK104160.1 gb:AK119904.1 gb:AK070528.1 gb:AK104030.1 gb:L34039.1 gb:L34038.1 gb:L19436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g2585011/11Superoxide dismutase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g25810OsAffx.27016.1.S1_at10/115+14946952..14948280hypothetical protein
LOC_Os05g25820NANA5+14952402..14953457retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g25830OsAffx.4431.1.S1_x_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25830OsAffx.4431.1.S1_at11/115+14957865..14960607hypothetical protein
LOC_Os05g25840Os.7933.1.S1_at11/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25840Os.9363.2.S1_x_at1/115+14962846..14966674ABC1 family protein, expressed
LOC_Os05g25850Os.4610.1.S1_at11/115+14968666..14973430Superoxide dismutase, mitochondrial precursor, putative, expressed
LOC_Os05g25860Os.53558.1.S1_at11/115+14974311..14976487expressed protein
LOC_Os05g25870Os.50866.1.S1_at11/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25870OsAffx.14833.1.S1_at5/115+14976631..14978387N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880Os.55474.1.S1_at11/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25880OsAffx.14833.1.S1_at5/115+14978594..14980168N2,N2-dimethylguanosine tRNA methyltransferase family protein, putative, expressed
LOC_Os05g25890Os.52500.1.S1_at11/115+14983404..14988171expressed protein
LOC_Os05g25900OsAffx.27017.1.S1_at11/115+14988958..14989182hypothetical protein
LOC_Os05g25910Os.55107.1.S1_at11/115+14991347..14992396uncharacterized plant-specific domain TIGR01568 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0019430biological_processremoval of superoxide radicals
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0008382molecular_functioniron superoxide dismutase activity
GO:0008383molecular_functionmanganese superoxide dismutase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4610.1.S1_at--335--4431Chr05:14971123..14971147 (25 bp)
GCCATGTCAATCATTCGATCTTCTG
LOC_Os05g25850
Os.4610.1.S1_at--991--6411Chr05:14971139..14971163 (25 bp)
GATCTTCTGGAATAACCTCAAGCCT
LOC_Os05g25850
Os.4610.1.S1_at--581--3311Chr05:14971297..14971321 (25 bp)
CACATGCAAAACTTGGCTGGGCCAT
LOC_Os05g25850
Os.4610.1.S1_at--865--5311Chr05:14971371..14971395 (25 bp)
GAAGGTGCTGCTTTACAAGGATCTG
LOC_Os05g25850
Os.4610.1.S1_at--287--8151Chr05:14971538..14971557 (20 bp)
GGAAACAACTGCTAACCAGGACCCT
LOC_Os05g25850
Os.4610.1.S1_at--354--751Chr05:14972370..14972394 (25 bp)
ATGTCTGGGAGCATGCGTACTACCT
LOC_Os05g25850
Os.4610.1.S1_at--548--611Chr05:14973131..14973155 (25 bp)
ATGCGACTGCTTGATGTTGTCTGAA
LOC_Os05g25850
Os.4610.1.S1_at--362--7171Chr05:14973149..14973173 (25 bp)
GTCTGAAGGCAACGCTCATGGTTTT
LOC_Os05g25850
Os.4610.1.S1_at--1134--10371Chr05:14973174..14973198 (25 bp)
TTTTCACCTAGTACTGCCATGGATC
LOC_Os05g25850
Os.4610.1.S1_at--1121--2431Chr05:14973212..14973236 (25 bp)
AAAATGGGCCTATTGCACTTCTGGA
LOC_Os05g25850
Os.4610.1.S1_at--905--5091Chr05:14973226..14973250 (25 bp)
GCACTTCTGGACCTTGTGTACATTG
LOC_Os05g25850
Target Sequence 
GCCATGTCAATCATTCGATCTTCTGGAATAACCTCAAGCCTATCAGCGAGGGTGGTGGTGANCCACCACATGCAAAACTT
GGCTGGGCCATTGATGAGGATTTTGGTTCATTTGAGGCACTTGTAAAGAAGATGAGTGCAGAAGGTGCTGCTTTACAAGG
ATCTGGATGGGTGTGGCTAGCTTTGGATAAAGAGGCAAAGAAGCTTTCAGTGGAAACAACTGCTAACCAGGACCCTCTGG
TAACGAAGGGGGCCAACTTGGTTCCTTTGTTGGGAATTGATGTCTGGGAGCATGCGTACTACCTGCAGTACAAGAATGTC
AGGCCAGACTACCTGAGCAACATCTGGAAGGTGATGAACTGGAAATACGCAGGGGAGGTGTACGAAAATGCGACTGCTTG
ATGTTGTCTGAAGGCAACGCTCATGGTTTTTTTTTCACCTAGTACTGCCATGGATCTTTGTATGCAATAAAAATGGGCCT
ATTGCACTTCTGGACCTTGTGTACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4610.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis