Browse Element(s) Details


Os.46462.2.S1_x_at

Description gb:NM_194579.1
DB_XREF= gi:37530517
TID=Os.46462.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46462 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative endosomal protein (OSJNBb0012A20.16), mRNA.
PROD=putative endosomal protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g023509/11Endomembrane protein 70 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g02284OsAffx.30239.2.S1_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02284OsAffx.30240.2.S1_x_at11/1110+800397..806031Protein kinase domain containing protein, expressed
LOC_Os10g02300Os.46839.1.S1_at11/1110+808973..810456Protein of unknown function, DUF614 containing protein, expressed
LOC_Os10g02314OsAffx.16205.1.S1_at2/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.25292.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02314OsAffx.6537.1.S1_at1/1110+811251..815262hypothetical protein
LOC_Os10g02330OsAffx.30241.1.S1_at11/1110+817842..819642hypothetical protein
LOC_Os10g02340OsAffx.20797.1.S1_at11/1110+820900..823141POT family protein, expressed
LOC_Os10g02340Os.4008.2.S1_x_at1/1110+820900..823141POT family protein, expressed
LOC_Os10g02350Os.46462.1.S1_at11/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02350Os.46462.2.S1_x_at9/1110+824277..827970Endomembrane protein 70 containing protein, expressed
LOC_Os10g02360Os.21379.1.S1_at11/1110+832317..834357Protein kinase domain containing protein, expressed
LOC_Os10g02369NANA10+847135..847360NA
LOC_Os10g02380Os.4020.1.S1_at11/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os10g02380OsAffx.32259.1.S1_x_at1/1110+850538..852711NADH-dependent oxidoreductase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006944biological_processmembrane fusion
GO:0009524cellular_componentphragmoplast
GO:0016021cellular_componentintegral to membrane
GO:0005486molecular_functiont-SNARE activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46462.2.S1_x_at--554--6811Chr10:825240..825264 (25 bp)
GTTTTCTTCCTTTCAGTGCCATTTA
LOC_Os10g02350
Os.46462.2.S1_x_at--623--10351Chr10:825139..825163 (25 bp)
TTTATCATCCTCCTTATTGTCACAG
LOC_Os10g02350
Os.46462.2.S1_x_at--634--6671Chr10:825103..825127 (25 bp)
GTTGCTCTGACCTACTTTCAGCTTA
LOC_Os10g02350
Os.46462.2.S1_x_at--449--3391Chr10:825085..825109 (25 bp)
CAGCTTACTGCTGAAGACCACGAGT
LOC_Os10g02350
Os.46462.2.S1_x_at--605--6451Chr10:824791..824815 (25 bp)
GATCAACTGGATTTTTCGTCTTCGC
LOC_Os10g02350
Os.46462.2.S1_x_at--456--4891Chr10:824768..824792 (25 bp)
GCTTACTGCTTATACTACTACCGTG
LOC_Os10g02350
Os.46462.2.S1_x_at--979--2571Chr10:824743..824767 (25 bp)
AACGGTCTGACATGTCTGGGTTCAT
LOC_Os10g02350
Os.46462.2.S1_x_at--499--9571Chr10:824707..824731 (25 bp)
TCTTCTTTGGTTACATGGCCTGCAT
LOC_Os10g02350
Os.46462.2.S1_x_at--388--10711Chr10:824633..824657 (25 bp)
TTGCTGTTCGTTCGCCATATATACA
LOC_Os10g02350
Os.46462.2.S1_x_at--360--2671Chr10:823611..823635 (25 bp)
AAGCGACGGGCTTCAAAGCTGCAGA
NONE
Os.46462.2.S1_x_at--762--7331Chr10:823568..823592 (25 bp)
GTGCAGGAACACAGATGGAACTATC
NONE
Target Sequence 
GTTTTCTTCCTTTCAGTGCCATTTACATTGAGCTGTACTACATCTTTGCAAGCATCTGGGGACACAGGATCTACACAATT
TACAGCATTCTGTTTATAGTCTTTATCATCCTCCTTATTGTCACAGCCTTCATTACTGTTGCTCTGACCTACTTTCAGCT
TACTGCTGAAGACCACGAGTGGTGGTGGAGGTCATTCCTTTGTGGTGGATCAACTGGATTTTTCGTCTTCGCTTACTGCT
TATACTACTACCGTGAACGGTCTGACATGTCTGGGTTCATGCAGACATCATTCTTCTTTGGTTACATGGCCTGCATCTGC
TACGCCTTCTTCCTCATGCTGGGCATGGTTGGTTTCCGTGCCGCCTTGCTGTTCGTTCGCCATATATACAAATCCATCAA
ATGTCAGCTAAAACAAAAGCAGCAGCAAATAGAAGAAAATCAAGAAGCGACGGGCTTCAAAGCTGCAGATGGCAGCCTAG
AAGAAGTGTGCAGGAACACAGATGGAACTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46462.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis