Browse Element(s) Details


Os.46469.1.S1_at

Description gb:AK073596.1
DB_XREF= gi:32983619
TID=Os.46469.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46469 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative lanthionine synthetase (OSJNBa0017E08.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048L17, full insert sequence.
FL= gb:AK073596.1 gb:AK064225.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3548011/11Lanthionine synthetase C-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35450Os.46897.1.S1_a_at11/1110+18640884..18645624Protein kinase domain containing protein, expressed
LOC_Os10g35460Os.15633.1.S2_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35460Os.15633.1.S1_at11/1110+18646403..18649458COBRA-like protein 2 precursor, putative, expressed
LOC_Os10g35470Os.15848.1.A1_a_at11/1110+18651758..18655606prolyl 4-hydroxylase alpha subunit, putative, expressed
LOC_Os10g35480Os.19949.1.S1_s_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35480Os.46469.1.S1_at11/1110+18657099..18659375Lanthionine synthetase C-like protein, expressed
LOC_Os10g35490Os.46397.1.S1_x_at11/1110+18659706..18661510epoxide hydrolase, putative, expressed
LOC_Os10g35500Os.48028.1.S1_x_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500Os.53171.1.S1_at11/1110+18664962..18667187expressed protein
LOC_Os10g35500OsAffx.12199.1.A1_at1/1110+18664962..18667187expressed protein
LOC_Os10g35510Os.47130.4.A1_x_at3/1110+18668119..18668442retrotransposon protein, putative, unclassified
LOC_Os10g35520Os.23214.1.S1_at11/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.1.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35520Os.46591.2.S1_x_at1/1110+18669203..18671431epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.2.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_x_at10/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35530Os.46591.1.S1_at9/1110+18672608..18674568epoxide hydrolase, putative, expressed
LOC_Os10g35540Os.46650.1.S1_at11/1110+18676322..18678143hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g35550Os.21457.1.S1_at11/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed
LOC_Os10g35550Os.10271.2.S1_x_at4/1110+18680095..18684612U5 snRNP-associated 102 kDa protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46469.1.S1_at--826--9631Chr10:18658776..18658800 (25 bp)
TCAGGTCTTCCATGATGAACATTTC
LOC_Os10g35480
Os.46469.1.S1_at--900--8971Chr10:18658791..18658815 (25 bp)
TGAACATTTCAAGCAGACGGCTGCA
LOC_Os10g35480
Os.46469.1.S1_at--744--7611Chr10:18658882..18658906 (25 bp)
GGGAACGCCTATGTATTTCTCTCAC
LOC_Os10g35480
Os.46469.1.S1_at--143--6891Chr10:18658894..18658918 (25 bp)
GTATTTCTCTCACTCTACCGGCTAA
LOC_Os10g35480
Os.46469.1.S1_at--1123--9531Chr10:18658907..18658931 (25 bp)
TCTACCGGCTAACTGGCAATGTTGA
LOC_Os10g35480
Os.46469.1.S1_at--124--711Chr10:18658925..18658949 (25 bp)
ATGTTGAGTACCTGTACCGGGCTAA
LOC_Os10g35480
Os.46469.1.S1_at--43--6991Chr10:18658938..18658962 (25 bp)
GTACCGGGCTAAGGCTTTTGCTTGC
LOC_Os10g35480
Os.46469.1.S1_at--666--4891Chr10:18658951..18658975 (25 bp)
GCTTTTGCTTGCTTTCTGCTTGAGA
LOC_Os10g35480
Os.46469.1.S1_at--688--7711Chr10:18659013..18659037 (25 bp)
GGGTGATCACCCATTTTCATTGTTT
LOC_Os10g35480
Os.46469.1.S1_at--932--6111Chr10:18659043..18659067 (25 bp)
GAGGGCTGGGATGGCTTACCTCCTT
LOC_Os10g35480
Os.46469.1.S1_at--691--3531Chr10:18659168..18659192 (25 bp)
CATCCATCCAAAGTAGCTGTATTGT
LOC_Os10g35480
Target Sequence 
TCAGGTCTTCCATGATGAACATTTCAAGCAGACGGCTGCAGAGGCTGCAGAAGTTGTCTGGAACCGGGGACTTCTCAAGA
GAGTTGGAATATGCCATGGTGTAAGTGGGAACGCCTATGTATTTCTCTCACTCTACCGGCTAACTGGCAATGTTGAGTAC
CTGTACCGGGCTAAGGCTTTTGCTTGCTTTCTGCTTGAGAAAGCTGATCAGTTGATTGCTGATGGGGNCATGCATGGGGG
TGATCACCCATTTTCATTGTTTGAAGGGAGGGCTGGGATGGCTTACCTCCTTCTAGACATGGTTAGCCCATCAGAATCAA
AGTTCCCGGCCTATGAGCTTTGAAGGGCATCATAAATATATGTATCCTGTTAGGATCAAATGCTCAGTGATCCATCCATC
CAAAGTAGCTGTATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46469.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis