Browse Element(s) Details


Os.46657.1.A1_at

Description gb:CB620423
DB_XREF= gi:29615411
DB_XREF=OSIIEa05K03.r
CLONE=OSIIEa05K03
TID=Os.46657.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.46657 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0051D19.11), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g349401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34902NANA10+18301710..18302360ripening-related protein, putative
LOC_Os10g34910OsAffx.30676.2.S1_x_at11/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.30676.1.S1_x_at3/1110+18305831..18306517secretory protein, putative
LOC_Os10g34910OsAffx.12776.1.S1_at1/1110+18305831..18306517secretory protein, putative
LOC_Os10g34920OsAffx.30676.1.S1_at11/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.1.S1_x_at10/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34920OsAffx.30676.2.S1_x_at2/1110+18308184..18308723secretory protein, putative, expressed
LOC_Os10g34930Os.46450.1.S1_at10/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34930OsAffx.30676.2.S1_x_at5/1110+18310791..18312276secretory protein, putative, expressed
LOC_Os10g34940Os.46577.1.S1_at9/1110+18326944..18328368expressed protein
LOC_Os10g34940Os.46657.1.A1_at1/1110+18326944..18328368expressed protein
LOC_Os10g34960OsAffx.18521.1.S1_at11/1110+18328933..18330939Ubiquitin family protein, expressed
LOC_Os10g34970OsAffx.7997.1.S1_at11/1110+18331944..18333566hypothetical protein
LOC_Os10g34980OsAffx.18522.1.S1_at11/1110+18334614..18335224hypothetical protein
LOC_Os10g34990Os.46656.1.A1_at11/1110+18336901..18337350ubiquitin fusion protein, putative, expressed
LOC_Os10g35000Os.2534.1.S1_at11/1110+18337596..18339724G-patch domain containing protein, expressed
LOC_Os10g35010Os.37979.1.S1_a_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35010Os.37979.2.S1_at11/1110+18340372..18349394chloroplast inner envelope protein, putative, expressed
LOC_Os10g35020Os.2550.1.S1_at10/1110+18353337..18355965glycosyltransferase, putative, expressed
LOC_Os10g35020Os.5398.2.S1_x_at1/1110+18353337..18355965glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46657.1.A1_at--100--9271Chr10:18328167..18328191 (25 bp)
TCCTGTACAAGGTCTCCTGCGGCCG
LOC_Os10g34940
Os.46657.1.A1_at--1147--1471Chr10:18328471..18328495 (25 bp)
AGCAACGATTTCCATGGCTGCCGGA
NONE
Os.46657.1.A1_at--735--6511Chr10:18328477..18328501 (25 bp)
GATTTCCATGGCTGCCGGACCAGGC
NONE
Os.46657.1.A1_at--657--8091Chr10:18328493..18328517 (25 bp)
GGACCAGGCCGGCTCACTGCTTCAG
NONE
Os.46657.1.A1_at--746--9072Chr10:18328510..18328534 (25 bp)
TGCTTCAGCTACTGTCCAGGTAGCT
NONE
Os.46657.1.A1_at--20--9931Chr10:18328519..18328543 (25 bp)
TACTGTCCAGGTAGCTCGTTCAGAT
NONE
Os.46657.1.A1_at--276--4351Chr10:18328525..18328549 (25 bp)
CCAGGTAGCTCGTTCAGATTGATGA
NONE
Os.46657.1.A1_at--274--152Chr10:18328596..18328620 (25 bp)
ATTAGCTTATTATTCAGTTGTCTCG
NONE
Os.46657.1.A1_at--834--10212Chr10:18328606..18328630 (25 bp)
TATTCAGTTGTCTCGAATCTCGATG
NONE
Os.46657.1.A1_at--230--9512Chr10:18328616..18328640 (25 bp)
TCTCGAATCTCGATGAATGCGTTTG
NONE
Os.46657.1.A1_at--1087--1251Chr10:18328649..18328673 (25 bp)
AGATTCAGAGTTGGTGCCTGTTCTT
NONE
Target Sequence 
TCCTGTACAAGGTCTCCTGCGGCCGGCGTCCAGCGGTGGTGGTCATGAACGGCGGCGAGGACGCGATCCACCTCGTGCAG
TGGGTCTGGGACACGCACGGGCGGCGCGCGGTGGCGGGGGCGACATCCTCGACGCGGCCGACACGCGGCTGAACGGCGAG
TTCGACGGCGCAGACATGGAGCGCGCGCTGACCGCGGCCTGAGGCCGTCAGCGTGCTGCGGTTCGTGGNGCCGCTGCCGA
GCCTCCCGGCGAAGATGCCGGTGGCGAGTACGGGCCGCCGGTGTCCACAGCGCCGGCGGCCAGCAGCAACGATTTCCATG
GCTGCCGGACCAGGCCGGCTCACTGCTTCAGCTACTGTCCAGGTAGCTCGTTCAGATTGATGAATGGGTATTGATGAAAT
GGCAAGCCATGGATGCAAATCTCAATCGAATTAGCTTATTATTCAGTTGTCTCGAATCTCGATGAATGCGTTTGAGTATT
AGAGATTCAGAGTTGGTGCCTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46657.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis