Browse Element(s) Details


Os.46659.1.S1_at

Description gb:NM_197084.1
DB_XREF= gi:37535527
TID=Os.46659.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBa0029C15.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0029C15.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34450OsAffx.6862.1.S1_at11/1110+18052713..18053692hypothetical protein
LOC_Os10g34470Os.54752.1.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.2.S1_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34470Os.10785.4.S1_s_at11/1110+18056936..18062122HD domain containing protein, expressed
LOC_Os10g34480Os.10785.3.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34480OsAffx.30670.1.S1_at11/1110+18060371..18064774Cytochrome P450 family protein, expressed
LOC_Os10g34490OsAffx.25492.1.S1_at11/1110+18072612..18073671hypothetical protein
LOC_Os10g34490OsAffx.19217.1.S1_x_at3/1110+18072612..18073671hypothetical protein
LOC_Os10g34500Os.46659.1.S1_at11/1110+18074647..18078245expressed protein
LOC_Os10g34500Os.46659.1.S1_x_at10/1110+18074647..18078245expressed protein
LOC_Os10g34520Os.12368.1.S1_at11/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34520OsAffx.28592.1.S1_at2/1110+18081900..18084679Thioredoxin-like protein 4A, putative, expressed
LOC_Os10g34529NANA10+18086905..18087850hypothetical protein
LOC_Os10g34540Os.46560.1.S1_at11/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34540Os.46560.2.S1_x_at10/1110+18091115..18095793TPR Domain containing protein, expressed
LOC_Os10g34550OsAffx.8005.1.S1_at11/1110+18096523..18097989hypothetical protein
LOC_Os10g34560OsAffx.30672.1.S1_at11/1110+18099878..18100504hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46659.1.S1_at--267--3551Chr10:18076017..18076041 (25 bp)
CATCGTCCTGCATTATCAGATTTTC
LOC_Os10g34500
Os.46659.1.S1_at--553--4011Chr10:18076014..18076038 (25 bp)
CGTCCTGCATTATCAGATTTTCTGT
LOC_Os10g34500
Os.46659.1.S1_at--226--4991Chr10:18075138..18075162 (25 bp)
GCATGCGTGAAGAGGCCGGCGATCG
LOC_Os10g34500
Os.46659.1.S1_at--363--4691Chr10:18074949..18074973 (25 bp)
GCGGCAAACGCCCTGTCGATCATGA
LOC_Os10g34500
Os.46659.1.S1_at--801--2371Chr10:18074944..18074968 (25 bp)
AAACGCCCTGTCGATCATGAGGAAG
LOC_Os10g34500
Os.46659.1.S1_at--997--4151Chr10:18074939..18074963 (25 bp)
CCCTGTCGATCATGAGGAAGGCGGC
LOC_Os10g34500
Os.46659.1.S1_at--785--2711Chr10:18074820..18074844 (25 bp)
AAGCACCGGGACAAGGTGGCCAGCA
LOC_Os10g34500
Os.46659.1.S1_at--269--1771Chr10:18074816..18074840 (25 bp)
ACCGGGACAAGGTGGCCAGCAACGC
LOC_Os10g34500
Os.46659.1.S1_at--727--2891Chr10:18074808..18074832 (25 bp)
AAGGTGGCCAGCAACGCCGGCGAGA
LOC_Os10g34500
Os.46659.1.S1_at--947--5371Chr10:18074785..18074809 (25 bp)
GAAGAACGTCCGGTGCCAGCTCTGC
LOC_Os10g34500
Os.46659.1.S1_at--1157--9271Chr10:18074777..18074801 (25 bp)
TCCGGTGCCAGCTCTGCGACGTGCT
LOC_Os10g34500
Target Sequence 
CATCGTCCTGCATTATCAGATTTTCTGTCGGCGCAGCAGCAGCAGCAGCAGCCACCTCCACCGGCGCAGCATGGCGCATG
CGTGAAGAGGCCGGCGATCGGGCCGCCTCCGGGGTTCGCCGGCGTCCGCCAGCCACCGCAGAAGCAGCAGCAGCTGCCAC
CACCACCACGGCGGAGGGCGCAGCAGCAGCCGGCGAGCGCCGCCGCCCATCACCGCAACCCGAACCGCCACCACCTGTCC
GGCGTCGCCGCGCCGCCCGCGGCGGCGGCAAACGCCCTGTCGATCATGAGGAAGGCGGCGGCCGCCGGCGGTGGCGGCGC
CGCCCTGTACTGCGGCGTGTGCAACGTGAAGTGCATGACGCGGTTCAACCTGAGGGAGCACGAGGCCGGGAGGAAGCACC
GGGACAAGGTGGCCAGCAACGCCGGCGAGAAGAACGTCCGGTGCCAGCTCTGCGACGTGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis