Browse Element(s) Details


Os.46774.1.S1_at

Description gb:AK111668.1
DB_XREF= gi:37988331
TID=Os.46774.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153P21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153P21, full insert sequence.
FL= gb:AK111668.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5490011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g54860Os.47351.1.S1_at1/113+31127718..3112950260S ribosomal protein L13a-2, putative
LOC_Os03g54870OsAffx.25714.2.S1_s_at11/113+31130796..31133330expressed protein
LOC_Os03g54870OsAffx.25714.1.S1_at11/113+31130796..31133330expressed protein
LOC_Os03g54880Os.37742.1.S1_at6/113+31136383..31136978ATP-binding cassette sub-family B member 8, mitochondrial precursor, putative
LOC_Os03g54890Os.12202.1.S1_at11/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54890Os.47351.1.S1_at1/113+31142265..3114434060S ribosomal protein L13a-2, putative, expressed
LOC_Os03g54900Os.46774.1.S1_at11/113+31146033..31151362Leucine Rich Repeat family protein, expressed
LOC_Os03g54910Os.9502.1.S1_at10/113+31155353..31157769expressed protein
LOC_Os03g54920OsAffx.13490.1.S1_at11/113+31159621..31162675expressed protein
LOC_Os03g54920Os.10970.1.S1_at10/113+31159621..31162675expressed protein
LOC_Os03g54930OsAffx.3609.1.S1_at11/113+31164464..31170865Leo1
LOC_Os03g54930Os.36267.1.S1_s_at1/113+31164464..31170865Leo1
LOC_Os03g54950Os.28943.1.S1_x_at2/113+31175400..31178099retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009738biological_processabscisic acid mediated signaling
GO:0005886cellular_componentplasma membrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46774.1.S1_at--475--6171Chr03:31146601..31146625 (25 bp)
GAGGATCTTTATGTTAGCCCACTGT
LOC_Os03g54900
Os.46774.1.S1_at--1105--6751Chr03:31146589..31146613 (25 bp)
GTTAGCCCACTGTACTCGAGCAGTA
LOC_Os03g54900
Os.46774.1.S1_at--183--5931Chr03:31146572..31146596 (25 bp)
GAGCAGTACTACAGGCTAAGCACGC
LOC_Os03g54900
Os.46774.1.S1_at--512--4171Chr03:31146546..31146570 (25 bp)
CCCACAGCAGTAGCAACCTTTGATG
LOC_Os03g54900
Os.46774.1.S1_at--168--6791Chr03:31146491..31146515 (25 bp)
GTTATGGGACGCCTTAATATCGCAA
LOC_Os03g54900
Os.46774.1.S1_at--102--4611Chr03:31146462..31146486 (25 bp)
GCGACTCATGGATAACTGGACGATT
LOC_Os03g54900
Os.46774.1.S1_at--137--5431Chr03:31146429..31146453 (25 bp)
GAAGCCTTCGCTTTTGGTAGATCAT
LOC_Os03g54900
Os.46774.1.S1_at--145--10351Chr03:31146402..31146426 (25 bp)
TTTAGCAAGCTTGGAGTGTTCACTT
LOC_Os03g54900
Os.46774.1.S1_at--947--731Chr03:31146362..31146386 (25 bp)
ATGTTCATAACAGCGTCCAGTGGGT
LOC_Os03g54900
Os.46774.1.S1_at--294--9571Chr03:31146327..31146351 (25 bp)
TCTTGCCCATTTCTGTACTACCATA
LOC_Os03g54900
Os.46774.1.S1_at--970--3951Chr03:31146300..31146324 (25 bp)
CGGAGTACTCCTTCGATCCAATAAT
LOC_Os03g54900
Target Sequence 
GAGGATCTTTATGTTAGCCCACTGTACTCGAGCAGTACTACAGGCTAAGCACGCCCCCACAGCAGTAGCAACCTTTGATG
GTGTTATGGGATGGCCAATCTTTGTGTTATGTTATGGGACGCCTTAATATCGCAAGTCGGCGACTCATGGATAACTGGAC
GATTGTTGATGAGAAGCCTTCGCTTTTGGTAGATCATGATTTAGCAAGCTTGGAGTGTTCACTTGTTGAAACTTGAAAGA
TGTTCATAACAGCGTCCAGTGGGTGCTCGTCCTTTCTTGCCCATTTCTGTACTACCATATNCGGAGTACTCCTTCGATCC
AATAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis