Browse Element(s) Details


Os.46785.2.S1_x_at

Description gb:NM_197046.1
DB_XREF= gi:37535451
TID=Os.46785.2
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46785 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0012L23.31), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3412011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g418305/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g406405/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g432205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g015705/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g038305/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g520205/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g115505/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g365004/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g432904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g191904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g120904/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g230704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g205704/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g026704/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os11g154004/11retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g551403/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g210803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g222103/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g058403/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g026003/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g119803/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g442903/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g357802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g479202/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g358102/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g121302/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g166802/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g052001/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g505301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g352901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g120901/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g34064OsAffx.29731.2.S1_at11/1110+17855547..17856914hypothetical protein
LOC_Os10g34071NANA10+17857545..17857943retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34078OsAffx.29731.1.S1_at11/1110+17858731..17860621retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g34090OsAffx.20244.1.S1_at11/1110+17866622..17869458hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34110OsAffx.8016.1.S1_x_at11/1110+17873644..17876707hypothetical protein
LOC_Os10g34120Os.46785.2.S1_x_at11/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.30226.2.S1_x_at2/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34120OsAffx.442.1.S1_x_at1/1110+17878663..17883545retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g34130OsAffx.20242.3.S1_x_at11/1110+17884950..17888169nodulin, putative
LOC_Os10g34130OsAffx.20242.1.S1_x_at1/1110+17884950..17888169nodulin, putative
LOC_Os10g34140OsAffx.18511.1.S1_at11/1110+17889881..17890612hypothetical protein
LOC_Os10g34150OsAffx.20242.1.S1_x_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.1.S1_at11/1110+17895693..17897696nodulin, putative
LOC_Os10g34150OsAffx.20242.3.S1_x_at1/1110+17895693..17897696nodulin, putative
LOC_Os10g34170Os.21367.1.S1_at11/1110+17902051..17906905Domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46785.2.S1_x_at--1120--67118Chr12:21795297..21795321 (25 bp)
GTTCTTCGTCGTTTCAATATGCATG
LOC_Os12g35810
Os.46785.2.S1_x_at--723--4991Chr10:17882776..17883071 (25 bp)
GCATGATGTAAAACCATTTGGGAGA
LOC_Os10g34120
Os.46785.2.S1_x_at--512--8375Chr10:17883127..17883151 (25 bp)
GGCGAAGATCGCTCACAGGTTATGT
LOC_Os10g34120
Os.46785.2.S1_x_at--1146--5153Chr10:17883186..17883210 (25 bp)
GCAAGTTTGCAAGCAACGGTTGCCT
LOC_Os10g34120
Os.46785.2.S1_x_at--577--2577Chr10:17883200..17883224 (25 bp)
AACGGTTGCCTTATCTACTACTGAA
LOC_Os10g34120
Os.46785.2.S1_x_at--343--36724Chr10:17883270..17883294 (25 bp)
CTTAGAGGTTTGTACACTGAGCTTT
LOC_Os10g34120
Os.46785.2.S1_x_at--735--15521Chr12:21795820..21795844 (25 bp)
AGCTTTGTGGAGTTACGTCTTGCAT
LOC_Os12g35810
Os.46785.2.S1_x_at--216--3591Chr10:17883404..17883428 (25 bp)
CATTATTCGAGGTGTGATTGTTGAA
LOC_Os10g34120
Os.46785.2.S1_x_at--952--64518Chr10:17883449..17883473 (25 bp)
GATAAGTACTCATGATAACCCAGCT
LOC_Os10g34120
Os.46785.2.S1_x_at--363--64719Chr10:17883462..17883486 (25 bp)
GATAACCCAGCTGATATGATGACAA
LOC_Os10g34120
Os.46785.2.S1_x_at--929--1692Chr10:17883487..17883511 (25 bp)
AGCCAGTTTCTGCTACTAAGTTTGA
LOC_Os10g34120
Target Sequence 
GTTCTTCGTCGTTTCAATATGCATGATGTAAAACCATTTGGGAGATCTAGAGATGGATTTGTTGGTTATGTGGATTCAGA
TTTTGCTGGAGATTTGGATAGGCGAAGATCGCTCACAGGTTATGTTTTCACTATAGGAGGATGTGATGTTAGTTGGAAGG
CAAGTTTGCAAGCAACGGTTGCCTTATCTACTACTGAAGCAGAGTATATGGCTATTTCTGAAGCTTGTAAAGAAGCTATT
TGGCTTAGAGGTTTGTACACTGAGCTTTGTGGAGTTACGTCTTGCATTAATATATTTTGTGATAGTCAAAGTGCAATATG
CCTTACAAAAGATCAGATGTTCCATGAGAGAACAAAGCACATTGATGTGAGATATCACATTATTCGAGGTGTGATTGTTG
AAGGTGATGTCAAGGTATGCAAGATAAGTACTCATGATAACCCAGCTGATATGATGACAAAGCCAGTTTCTGCTACTAAG
TTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46785.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis