Browse Element(s) Details


Os.4764.1.S1_at

Description gb:AK119228.1
DB_XREF= gi:37988851
TID=Os.4764.1
CNT=115
FEA=FLmRNA
TIER=FL+Stack
STK=16
UG=Os.4764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023121F20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-A08, full insert sequence.
FL= gb:AK061335.1 gb:AK119228.1 gb:AK099232.1 gb:AK100798.1 gb:AK060840.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0836011/11fiddlehead, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08330Os.9923.1.S1_s_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08330Os.9923.1.S1_at11/113+4228001..4229006ZIM motif family protein, expressed
LOC_Os03g08350Os.49458.1.S1_at11/113+4240052..4241962membrane associated salt-inducible protein, putative, expressed
LOC_Os03g08360Os.4764.1.S1_at11/113+4246095..4250980fiddlehead, putative, expressed
LOC_Os03g08370Os.33256.1.S1_at11/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08370Os.33256.1.S2_at10/113+4251989..4256585transposon protein, putative, unclassified, expressed
LOC_Os03g08380OsAffx.25019.1.S1_at11/113+4258579..4264002ABC transporter family protein, expressed
LOC_Os03g08390Os.15574.1.S1_at11/113+4266471..4270919expressed protein
LOC_Os03g08390OsAffx.23909.1.S1_at1/113+4266471..4270919expressed protein
LOC_Os03g08400OsAffx.31174.3.S1_x_at11/113+4272257..4276574hypothetical protein
LOC_Os03g08400OsAffx.31174.1.S1_at10/113+4272257..4276574hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000038biological_processvery-long-chain fatty acid metabolism
GO:0008610biological_processlipid biosynthesis
GO:0009913biological_processepidermal cell differentiation
GO:0010025biological_processwax biosynthesis
GO:0030497biological_processfatty acid elongation
GO:0042335biological_processcuticle biosynthesis
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
GO:0009922molecular_functionfatty acid elongase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4764.1.S1_at--612--8911Chr03:4250392..4250416 (25 bp)
TGCAGGGCAACCTGGGCCTCCGCGA
LOC_Os03g08360
Os.4764.1.S1_at--417--3411Chr03:4250471..4250495 (25 bp)
CAGCAGCATCTGGTACGAGCTGGCG
LOC_Os03g08360
Os.4764.1.S1_at--472--671Chr03:4250658..4250682 (25 bp)
ATGAACGCTTAAGCTGCAGTGGTAA
LOC_Os03g08360
Os.4764.1.S1_at--976--3451Chr03:4250674..4250698 (25 bp)
CAGTGGTAAGTATGCAGAGGCTAAT
LOC_Os03g08360
Os.4764.1.S1_at--881--5491Chr03:4250704..4250728 (25 bp)
GAAAATTACTGCAACGTCAAAAGAC
LOC_Os03g08360
Os.4764.1.S1_at--403--9691Chr03:4250720..4250744 (25 bp)
TCAAAAGACGGGATCGGCATGCGAT
LOC_Os03g08360
Os.4764.1.S1_at--1022--4971Chr03:4250736..4250760 (25 bp)
GCATGCGATGCCGGTTAAGGTTCAA
LOC_Os03g08360
Os.4764.1.S1_at--952--7391Chr03:4250774..4250798 (25 bp)
GTGTTGGTGTATTAGCAAGTCGGTT
LOC_Os03g08360
Os.4764.1.S1_at--246--1491Chr03:4250787..4250811 (25 bp)
AGCAAGTCGGTTTATGAGCCATAGA
LOC_Os03g08360
Os.4764.1.S1_at--136--7191Chr03:4250792..4250816 (25 bp)
GTCGGTTTATGAGCCATAGACTACC
LOC_Os03g08360
Os.4764.1.S1_at--960--7871Chr03:4250795..4250819 (25 bp)
GGTTTATGAGCCATAGACTACCATA
LOC_Os03g08360
Target Sequence 
TGCAGGGCAACCTGGGCCTCCGCGACGGCGACCTGGAGGCGTCGCGCGCCGCGCTCCACCGCTTCGGCAACACGTCGAGC
AGCAGCATCTGGTACGAGCTGGCGTACCTGGAGGCCAAGGGCCGCGTCCGCCGCGGCGACCGCGTGTGGCAGCTCGCCTT
CGGCTCCGGGTTCAAGTGCAACAGCGCCGTGTGGCGCGCCGTCCGCCGCGTGCGCCGCCCGGCGCGCAGCCCGTGGCTGG
ACTGCGTCGAGCAGTACCCGGCTCGCATGAACGCTTAAGCTGCAGTGGTAAGTATGCAGAGGCTAATGAACGGAAAATTA
CTGCAACGTCAAAAGACGGGATCGGCATGCGATGCCGGTTAAGGTTCAAGCTTGATTAATTTGTGTTGGTGTATTAGCAA
GTCGGTTTATGAGCCATAGACTACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis