Browse Element(s) Details


Os.48005.1.S1_x_at

Description gb:NM_190322.1
DB_XREF= gi:34907727
GEN=B1065G12.16
TID=Os.48005.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48005 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1065G12.16 (B1065G12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1065G12.16 (B1065G12.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6760011/11esterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g67570Os.14855.1.S1_at11/111+39597394..39601841expressed protein
LOC_Os01g67580Os.33212.2.S1_at11/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67580Os.50194.1.S1_at1/111+39603067..39609733ABC transporter family protein, expressed
LOC_Os01g67590Os.14090.1.S1_a_at11/111+39616212..39623444Peptidase family M3 containing protein, expressed
LOC_Os01g67600OsAffx.23960.1.S1_s_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67600Os.48005.1.S1_x_at11/111+39623837..39626634esterase, putative, expressed
LOC_Os01g67610OsAffx.11775.1.S1_at11/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.2.S1_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67610OsAffx.11775.1.S1_x_at10/111+39629006..39630045hypothetical protein
LOC_Os01g67620OsAffx.13122.2.S1_at10/111+39632362..39633060hypothetical protein
LOC_Os01g67620OsAffx.22604.1.S1_x_at1/111+39632362..39633060hypothetical protein
LOC_Os01g67630OsAffx.21788.1.S1_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.1.S1_x_at11/111+39634312..39637150POT family protein, expressed
LOC_Os01g67630OsAffx.21788.2.S1_x_at2/111+39634312..39637150POT family protein, expressed
LOC_Os01g67640OsAffx.21788.2.S1_x_at11/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.21788.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67640OsAffx.24785.1.S1_x_at1/111+39639579..39642540POT family protein, expressed
LOC_Os01g67650OsAffx.23961.1.S1_s_at11/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67650OsAffx.23961.2.S1_s_at8/111+39646238..39647836GRAS family transcription factor containing protein, expressed
LOC_Os01g67660OsAffx.9591.1.S1_x_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.9591.1.S1_at11/111+39648542..39650049hypothetical protein
LOC_Os01g67660OsAffx.21787.3.S1_at10/111+39648542..39650049hypothetical protein
LOC_Os01g67670OsAffx.23961.1.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein
LOC_Os01g67670OsAffx.23961.2.S1_s_at11/111+39651207..39652299GRAS family transcription factor containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48005.1.S1_x_at--1086--4491Chr01:39624606..39624630 (25 bp)
GCTAATTTTGTCACTCGGAAGGCAG
LOC_Os01g67600
Os.48005.1.S1_x_at--364--6671Chr01:39624546..39624570 (25 bp)
GTTGCACAGGTTCTGATGTACCCAT
LOC_Os01g67600
Os.48005.1.S1_x_at--129--911Chr01:39624486..39624510 (25 bp)
AGGCTTGCGAACTCATACTTCTATG
LOC_Os01g67600
Os.48005.1.S1_x_at--746--8211Chr01:39624415..39624439 (25 bp)
GGAATTCAGCCTGGATCATCCTGCT
LOC_Os01g67600
Os.48005.1.S1_x_at--75--5251Chr01:39624388..39624412 (25 bp)
GAATCCCCTGGCTCCTGATAGAGGA
LOC_Os01g67600
Os.48005.1.S1_x_at--214--6171Chr01:39624368..39624392 (25 bp)
GAGGAGGGCCACCACTGAAATGTAT
LOC_Os01g67600
Os.48005.1.S1_x_at--292--8971Chr01:39624353..39624377 (25 bp)
TGAAATGTATGCCTCCGACCTTGAC
LOC_Os01g67600
Os.48005.1.S1_x_at--1002--8991Chr01:39624263..39624287 (25 bp)
TGAATGTCGATGCACCTGTTCTTGA
LOC_Os01g67600
Os.48005.1.S1_x_at--48--711Chr01:39624221..39624245 (25 bp)
ATGAGTTTGCAACCCTCGATGTTTT
LOC_Os01g67600
Os.48005.1.S1_x_at--1144--6271Chr01:39624204..39624228 (25 bp)
GATGTTTTCCTCAAGACACCGCAGG
LOC_Os01g67600
Os.48005.1.S1_x_at--362--7291Chr01:39624170..39624194 (25 bp)
GTGCCGAGGACATCGCCATATGGAT
LOC_Os01g67600
Target Sequence 
GCTAATTTTGTCACTCGGAAGGCAGTAGAAGATGGAAAGCTATTTGACCCTATCAAGGTTGTTGCACAGGTTCTGATGTA
CCCATTCTTCATAGGAAGCGTTCCAACACACTCGGAAATAAGGCTTGCGAACTCATACTTCTATGACAAGTCCACATGTA
TACTTGCTTGGAGATTATTTTTGTCAGAGAAGGAATTCAGCCTGGATCATCCTGCTGCGAATCCCCTGGCTCCTGATAGA
GGAGGGCCACCACTGAAATGTATGCCTCCGACCTTGACAGTCATCGCGGAACATGACTGGATGAGGGATCGAGCAATTGC
ATACTCGGAGGAGCTCCGCAAGGTGAATGTCGATGCACCTGTTCTTGATTACAAGGATACAGTTCATGAGTTTGCAACCC
TCGATGTTTTCCTCAAGACACCGCAGGCCCAGGCCTGTGCCGAGGACATCGCCATATGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48005.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis