Browse Element(s) Details


Os.4803.1.S1_at

Description gb:AK058332.1
DB_XREF= gi:32968350
TID=Os.4803.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-C10, full insert sequence.
FL= gb:AK058332.1 gb:AK068013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5164011/11adhesion regulating molecule family, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g51610Os.27828.1.S1_a_at11/115+29505383..29510567Vacuolar cation/proton exchanger 1b, putative, expressed
LOC_Os05g51620Os.19034.1.S1_at11/115+29512303..29518084expressed protein
LOC_Os05g51620Os.50278.2.S1_at1/115+29512303..29518084expressed protein
LOC_Os05g51630Os.10391.1.S1_a_at11/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51630Os.2259.1.S1_s_at1/115+29524916..29533060early-responsive to dehydration protein, putative, expressed
LOC_Os05g51640Os.4803.1.S1_at11/115+29534432..29539656adhesion regulating molecule family, putative, expressed
LOC_Os05g51650Os.7005.1.S1_s_at11/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51650OsAffx.27407.1.S1_at10/115+29539790..29541836U6 snRNA-associated Sm-like protein LSm8, putative, expressed
LOC_Os05g51660OsAffx.15200.4.A1_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51660Os.53200.1.S1_s_at11/115+29541501..29542508SCP-like extracellular protein, expressed
LOC_Os05g51670Os.10131.1.S1_a_at11/115+29548701..29552580UDP-glucose 4-epimerase GEPI48, putative, expressed
LOC_Os05g51680Os.10131.4.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed
LOC_Os05g51680Os.10131.3.A1_at11/115+29551649..29554990SCP-like extracellular protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007155biological_processcell adhesion
GO:0016021cellular_componentintegral to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4803.1.S1_at--660--10832Chr08:3506368..3506388 (21 bp)
TTGGGCGTCGTCGTCATATAATGGA
NONE
Os.4803.1.S1_at--481--4791Chr05:29534918..29534942 (25 bp)
GCTCCTCCCAGTTCAAGTACAGATG
LOC_Os05g51640
Os.4803.1.S1_at--336--1311Chr05:29534898..29534922 (25 bp)
AGATGATCGATCTCATTCTTCTCTG
LOC_Os05g51640
Os.4803.1.S1_at--421--9571Chr05:29534882..29534906 (25 bp)
TCTTCTCTGCTCTGCATGTATGATG
LOC_Os05g51640
Os.4803.1.S1_at--671--6611Chr05:29534828..29534852 (25 bp)
GTTGGCGATTCCCAAACAGCTTTGC
LOC_Os05g51640
Os.4803.1.S1_at--855--10351Chr05:29534790..29534814 (25 bp)
TTTTTCGTCGTCCAAAGCATCGTTG
LOC_Os05g51640
Os.4803.1.S1_at--1139--4971Chr05:29534774..29534798 (25 bp)
GCATCGTTGGTAGCATCTGTACTGA
LOC_Os05g51640
Os.4803.1.S1_at--580--2431Chr05:29534714..29534738 (25 bp)
AAAAGCTTCGATCCTGTCGTTGTCG
LOC_Os05g51640
Os.4803.1.S1_at--1123--6611Chr05:29534687..29534711 (25 bp)
GTTGGACGCCGTTGTTCATGTGTTT
LOC_Os05g51640
Os.4803.1.S1_at--355--10611Chr05:29534664..29534688 (25 bp)
TTCGGCCCACATTAGTACTCATAAG
LOC_Os05g51640
Os.4803.1.S1_at--343--231Chr05:29534616..29534640 (25 bp)
ATATTCATGCATTTTCGTGCCAAGG
LOC_Os05g51640
Target Sequence 
TTGGGCGTCGTCGTCATATAATGGATGGATGGATCGGCTGATCGATCAGCTGGGTTGGGCGTACGTCTGCGCACTGCTCC
TCCCAGTTCAAGTACAGATGATCGATCTCATTCTTCTCTGCTCTGCATGTATGATGGTAGAATCCTGAGCAAGATGCTCG
CGGAAGTTGGCGATTCCCAAACAGCTTTGCCTCTTGCTGCTTCTTTTTCGTCGTCCAAAGCATCGTTGGTAGCATCTGTA
CTGATGAAGAAGATGCTCGCCCTCGTCATCGTTGACGGGNAAAAGCTTCGATCCTGTCGTTGTCGTTGTTGGACGCCGTT
GTTCATGTGTTTCGGCCCACATTAGTACTCATAAGATTTGGGGCAAAAGTATTTACTAATATTCATGCATTTTCGTGCCA
AGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis