Browse Element(s) Details


Os.48075.1.S1_at

Description gb:AK100284.1
DB_XREF= gi:32985493
TID=Os.48075.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48075 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075D13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075D13, full insert sequence.
FL= gb:AK100284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6278011/11S1 RNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62720Os.40400.1.S1_at11/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62720Os.47354.1.A1_at1/113+35433240..354366933' exoribonuclease family, domain 1 containing protein, expressed
LOC_Os03g62730Os.8707.1.S1_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62730Os.8707.1.S2_at11/113+35437810..35445747transposon protein, putative, unclassified, expressed
LOC_Os03g62740Os.8707.3.S1_x_at11/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62740Os.8707.2.A1_at9/113+35442476..35445756GDSL-motif lipase/hydrolase family protein, putative, expressed
LOC_Os03g62750OsAffx.25798.1.S1_at11/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62750Os.8356.1.S1_at1/113+35450259..35456299ARTEMIS protein, chloroplast precursor, putative, expressed
LOC_Os03g62760Os.20700.1.S1_at11/113+35455661..35456964expressed protein
LOC_Os03g62770OsAffx.25799.1.S1_at11/113+35458027..35458911hypothetical protein
LOC_Os03g62780Os.48075.1.S1_at11/113+35459476..35462830S1 RNA binding domain containing protein, expressed
LOC_Os03g62790Os.7536.1.S1_at11/113+35463158..35465296Pirin, putative, expressed
LOC_Os03g62800NANA3+35468607..35471744retrotransposon protein, putative, unclassified
LOC_Os03g62810OsAffx.667.1.S1_at3/113+35472508..35475674transposon protein, putative, Mutator sub-class
LOC_Os03g62820NANA3+35477948..35479080hypothetical protein
LOC_Os03g62830OsAffx.13589.1.S1_at11/113+35482857..35485781hypothetical protein
LOC_Os03g62840OsAffx.13590.1.S1_at11/113+35486614..35487177hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48075.1.S1_at--7--3311Chr03:35460373..35460397 (25 bp)
CACAAGATCTGGAACTCTGGCTTTC
LOC_Os03g62780
Os.48075.1.S1_at--752--8291Chr03:35460271..35460379 (25 bp)
GGCTTTCCAGTGTGCCAGCTAAGGA
LOC_Os03g62780
Os.48075.1.S1_at--333--8151Chr03:35460249..35460273 (25 bp)
GGACAATCAGTTCAAGCTTCTTGCT
LOC_Os03g62780
Os.48075.1.S1_at--514--2711Chr03:35460236..35460260 (25 bp)
AAGCTTCTTGCTCGAGCTGGGCGAC
LOC_Os03g62780
Os.48075.1.S1_at--937--191Chr03:35459918..35459942 (25 bp)
ATATTTGACAACCAGCCTAGACCAG
LOC_Os03g62780
Os.48075.1.S1_at--1140--4031Chr03:35459738..35459762 (25 bp)
CGTTGTTTCCTCATTCTGATGCTGA
LOC_Os03g62780
Os.48075.1.S1_at--107--8911Chr03:35459716..35459740 (25 bp)
TGAGCTTCCTCTCAGCTGGAGACTA
LOC_Os03g62780
Os.48075.1.S1_at--701--6931Chr03:35459652..35459676 (25 bp)
GTAGGTAGTTATCTTCGTGCATGCA
LOC_Os03g62780
Os.48075.1.S1_at--603--3991Chr03:35459637..35459661 (25 bp)
CGTGCATGCATGTACCTATCTGAAA
LOC_Os03g62780
Os.48075.1.S1_at--510--1571Chr03:35459535..35459559 (25 bp)
AGCTAGATATGCCTTTCTTGTCAAA
LOC_Os03g62780
Os.48075.1.S1_at--572--7091Chr03:35459516..35459540 (25 bp)
GTCAAAGCTGTTTCTTGTTCAACAT
LOC_Os03g62780
Target Sequence 
CACAAGATCTGGAACTCTGGCTTTCCAGTGTGCCAGCTAAGGACAATCAGTTCAAGCTTCTTGCTCGAGCTGGGCGACAG
GTCCAAGAACTATATTTGACAACCAGCCTAGACCAGGAGGGCATAAAGAAGGCGGTACAGAGAGTACTAGGACGTGTTCC
TTGAGTTTGGAGAACAGCGAGTATGAGGCAGCATGCCTGTACTCCCCCCAATTTTCTGACCAACCGACNATAGTGAAACA
ACAGCACGAGCAGACAACCTGAAAAGTTCGTCGTTGTTTCCTCATTCTGATGCTGAGCTTCCTCTCAGCTGGAGACTACT
TAACCGAAAATTGCAAATTTTGTCAGTAATACAATGAGTAGGTAGTTATCTTCGTGCATGCATGTACCTATCTGAAACCT
CAAGGCCACCTGTATATATATCAGTATTCATCTTCAGTGNCATCAATTCATCATATCTTGTTCTGGTAACTAATAGCTAG
ATATGCCTTTCTTGTCAAAGCTGTTTCTTGTTCAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48075.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis