Browse Element(s) Details


Os.48263.1.S1_at

Description gb:AK106954.1
DB_XREF= gi:32992163
TID=Os.48263.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48263 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-E07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E07, full insert sequence.
FL= gb:AK106954.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g551205/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55070OsAffx.4179.1.S1_at11/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55070OsAffx.13740.1.S1_at1/114+32528122..32531761oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os04g55080Os.19084.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55080OsAffx.14423.1.S1_at11/114+32534595..32539669Cyclic nucleotide-gated ion channel 7, putative, expressed
LOC_Os04g55090Os.53360.1.S1_at11/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55090Os.53360.1.S2_at10/114+32539828..32543383pentatricopeptide, putative, expressed
LOC_Os04g55100OsAffx.4180.1.S1_at10/114+32545749..32547296expressed protein
LOC_Os04g55110Os.53825.1.S1_at11/114+32550489..32553189expressed protein
LOC_Os04g55110OsAffx.18731.1.A1_at1/114+32550489..32553189expressed protein
LOC_Os04g55120Os.48263.1.S1_at5/114+32554329..32554895hypothetical protein
LOC_Os04g55130OsAffx.4181.1.S1_at11/114+32558593..32560061expressed protein
LOC_Os04g55140Os.46785.2.S1_x_at3/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.442.1.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55140OsAffx.30226.2.S1_x_at1/114+32562029..32565926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g55150Os.18254.1.A1_at11/114+32569674..32575089UBA/TS-N domain containing protein, expressed
LOC_Os04g55170NANA4+32578710..32578979Protease inhibitor/seed storage/LTP family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48263.1.S1_at--520--9331Chr04:32554573..32554597 (25 bp)
TCGCCAGGTACGTGCGCGCGCTCGT
LOC_Os04g55120
Os.48263.1.S1_at--562--4171Chr04:32554671..32554695 (25 bp)
CCCGACGTCGACAAGACGCCGAGGA
LOC_Os04g55120
Os.48263.1.S1_at--536--971Chr04:32554695..32554719 (25 bp)
AGGAGCAGGTCCAAGCCCAAGTCGA
LOC_Os04g55120
Os.48263.1.S1_at--1143--1771Chr04:32554757..32554781 (25 bp)
ACCGAAAGCCATGCGGTCGCCGGTG
LOC_Os04g55120
Os.48263.1.S1_at--967--4271Chr04:32554804..32554828 (25 bp)
CCTCGACGGTGCACGCCGTGAAGGA
LOC_Os04g55120
Os.48263.1.S1_at--39--3971Chr04:32554940..32554964 (25 bp)
CGGATGCAGCGGTGTGTTACTGTTA
NONE
Os.48263.1.S1_at--378--1071Chr04:32554964..32554988 (25 bp)
AGGGTTTAATGCTTGTTCATCTCCA
NONE
Os.48263.1.S1_at--307--8791Chr04:32554977..32555001 (25 bp)
TGTTCATCTCCATGCTTTGGTAATG
NONE
Os.48263.1.S1_at--1079--10231Chr04:32554992..32555016 (25 bp)
TTTGGTAATGGTCGAGCACTGTGCT
NONE
Os.48263.1.S1_at--244--8411Chr04:32555054..32555074 (21 bp)
GGCGCCATTGCTGCATGTACAATAA
NONE
Os.48263.1.S1_at--836--5111Chr04:32555192..32555216 (25 bp)
GCACATGGAGTGGTTAATTGCGATT
NONE
Target Sequence 
TCGCCAGGTACGTGCGCGCGCTCGTCGTCGTCGTCGTCCAGGGCCGGGAGGACGAGTCGTCCTCGGCGCTCGTGCTCGTG
CCGAGCCAGCAGCTGCAGCCCGACGTCGACAAGACGCCGAGGAGGAGCAGGTCCAAGCCCAAGTCGACCNAAGGAGGTCG
CCGCCGNCGCCGCCGCTCCCACCACACCGAAAGCCATGCGGTCGCCGGTGCTGGCCATCGGCNGGCAGGGCCGCCTCGAC
GGTGCACGCCGTGAAGGACGGCGAGAAAGNCGGTGAGGACATGGTCAGNGTGGGACCNGCCNTGTTCCANNNGGACNCTN
CAAGCNCNCAACTNGNAGCGCGCNAACGNACGACGATGCCGCGCGTGATCNCGGCGCCGGCGGCGGATGCAGCGGTGTGT
TACTGTTAGGGTTTAATGCTTGTTCATCTCCATGCTTTGGTAATGGTCGAGCACTGTGCTCTTTCTNCNNNNNNNANNNA
NANNNNNNNANNNNTCCGGCGCCATTGCTGCATGTACAATAAATGCACATGGAGTGGTTAATTGCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48263.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis