Browse Element(s) Details


Os.4845.1.S1_at

Description gb:AK065639.1
DB_XREF= gi:32975657
TID=Os.4845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013050J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013035H03, full insert sequence.
FL= gb:AK099615.1 gb:AK065639.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g543508/11SPRY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54280Os.27639.1.S1_x_at8/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.53731.1.S1_at3/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54280Os.9913.1.S1_at2/114+32100580..32104684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g54300Os.6764.2.S1_at10/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54300Os.7705.1.S1_at9/114+32112432..32114924wound induced protein, putative, expressed
LOC_Os04g54310OsAffx.14412.1.S1_at11/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.6764.1.S1_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_x_at9/114+32117280..32118805hypothetical protein
LOC_Os04g54310Os.39998.1.A1_at8/114+32117280..32118805hypothetical protein
LOC_Os04g54320Os.7707.1.S1_at11/114+32119350..32120467expressed protein
LOC_Os04g54330Os.10971.1.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.1.S1_a_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54330Os.10971.2.S1_at11/114+32120595..32123359N-terminal acetyltransferase complex ARD1 subunit homolog, putative, expressed
LOC_Os04g54340Os.53037.1.S1_at11/114+32123528..32129355Double-strand break repair protein MRE11, putative, expressed
LOC_Os04g54350Os.4845.1.S1_at8/114+32129344..32132785SPRY domain containing protein, expressed
LOC_Os04g54360Os.5910.1.S1_at11/114+32134421..32136977Glycosyl transferase family 8 protein, expressed
LOC_Os04g54370Os.54152.1.S1_at7/114+32137092..32139691expressed protein
LOC_Os04g54380Os.57400.1.S1_at11/114+32140701..32143586aluminum resistance protein homolog, putative
LOC_Os04g54390Os.33674.1.S1_at11/114+32143944..32145970S1/P1 Nuclease family protein, expressed
LOC_Os04g54400Os.56266.1.S1_at11/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54400OsAffx.22607.1.S1_at1/114+32146617..32150894transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g54410Os.10044.1.S2_at11/114+32151405..32159199expressed protein
LOC_Os04g54410Os.10044.1.S1_at11/114+32151405..32159199expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4845.1.S1_at--320--1471Chr04:32130209..32130233 (25 bp)
AGAATTCAAGCTCCCATTGGTGACA
LOC_Os04g54350
Os.4845.1.S1_at--145--8191Chr04:32130184..32130208 (25 bp)
GGAACCAGTCCTATGCAGTTGTGTC
LOC_Os04g54350
Os.4845.1.S1_at--541--3311Chr04:32130097..32130121 (24 bp)
CACATCCTGCCGTGTACAATTCTGG
LOC_Os04g54350
Os.4845.1.S1_at--517--2091Chr04:32130061..32130085 (25 bp)
ACATGCCCTATATGCAGCATTCTCA
LOC_Os04g54350
Os.4845.1.S1_at--256--9531Chr04:32129730..32130065 (25 bp)
TCTCACGATGTGCACAACTCTGGAT
LOC_Os04g54350
Os.4845.1.S1_at--490--8571Chr04:32129710..32129734 (25 bp)
TGGATCACAGTACTCAGCTCCAGTC
LOC_Os04g54350
Os.4845.1.S1_at--1002--1591NONE
AGCTCCTCCACCAAACTATATGAAT
NONE
Os.4845.1.S1_at--457--2631NONE
AACCTTTTGGCAGTTCGGCTCGCAG
NONE
Os.4845.1.S1_at--955--6891Chr04:32129450..32129474 (25 bp)
GTATCCAGTTTACGACTTTTGCATG
LOC_Os04g54350
Os.4845.1.S1_at--38--8591NONE
TGGTTTGGCCAACGCAGAGTGTTAT
NONE
Os.4845.1.S1_at--941--7351Chr04:32129384..32129408 (25 bp)
GTGAACAACTTTCGGACGCTCGGTC
LOC_Os04g54350
Target Sequence 
AGAATTCAAGCTCCCATTGGTGACAGGAACCAGTCCTATGCAGTTGTGTCAAATGAAGCCTATGGGAGATCTGGCTATGA
AGCGGCAAATTCTGTTGGAAGGCCTATCAATACACATCCTGCCGTGTACAATTCTGGCAGTGGCAATTACATGCCCTATA
TGCAGCATTCTCACGATGTGCACAACTCTGGATCACAGTACTCAGCTCCAGTCCCCAGGCCTCCTTACGGAGCTCCTCCA
CCAAACTATATGAATCCACAGACGAGCATTTGGCATATCTAGCAAGGCAGCTAATTTGTGGCGATAAGCGAACACTGGAC
ATGGTACCAAGAAAAGTAGTTTAAGTAGATATGCGCGAGTGCGTGACCTATAGGTTCCAGGGAACCTTTTGGCAGTTCGG
CTCGCAGATTTTTGTATAGTTATATGCACGCATAANCCATTCTCCGTATGTATCCAGTTTACGACTTTTGCATGATCAAT
TAGTATTGGTTTGGCCAACGCAGAGTGTTATGTCGTGAACAACTTTCGGACGCTCGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis