Browse Element(s) Details


Os.48959.1.S1_at

Description gb:AK103073.1
DB_XREF= gi:32988282
TID=Os.48959.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48959 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033118C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033118C07, full insert sequence.
FL= gb:AK103073.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g215107/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48959.1.S1_at--73--5771Chr03:12269963..12269987 (25 bp)
GACGTTGAGCTGATGAAGTACCTGA
LOC_Os03g21510
Os.48959.1.S1_at--103--5911Chr03:12270092..12270116 (25 bp)
GAGCTCCGGCAGTCTGCTTCAGAGA
LOC_Os03g21510
Os.48959.1.S1_at--935--9431Chr03:12270161..12270185 (25 bp)
TCGGCGTAATGCCTGACGAGCTGCT
LOC_Os03g21510
Os.48959.1.S1_at--559--1871Chr03:12270176..12270200 (25 bp)
ACGAGCTGCTGTGTGGTTTACTGGT
LOC_Os03g21510
Os.48959.1.S1_at--884--7191Chr03:12270245..12270269 (25 bp)
GTCGTGATGGCCTCTTCAATGTAGC
LOC_Os03g21510
Os.48959.1.S1_at--434--3411Chr03:12270280..12270304 (25 bp)
CAGCACTGGCACTATGTAGAAGCAT
LOC_Os03g21510
Os.48959.1.S1_at--91--2831Chr03:12270317..12270341 (25 bp)
AAGTTGATTTGCTGGCTTCTTGACC
LOC_Os03g21510
Os.48959.1.S1_at--1100--171Chr03:12270345..12270369 (25 bp)
ATTTACATGCTGTGCTCCGGTGTTG
NONE
Os.48959.1.S1_at--180--9291Chr03:12270360..12270384 (25 bp)
TCCGGTGTTGGTAACTTGCGTTCAT
NONE
Os.48959.1.S1_at--640--7091Chr03:12270393..12270417 (25 bp)
GTCACTAGGGAGTCTTTTTCTATGG
NONE
Os.48959.1.S1_at--143--6191NONE
GAGGAGCCAACGTGATAGCCAGTTT
NONE
Target Sequence 
GACGTTGAGCTGATGAAGTACCTGAACATAGAAGNCGANCTGGTGCAGATGCTNCAGNTCGCANTGGCGTGCACGTCGCG
NNCCCCTGAACGGCGCCCGACGNTGNCGGAGNTGATCAGNATGATCGAGGAGCTCCGGCAGTCTGCTTCAGAGAGCCGCG
ATTCCTCCAACGNANATGCCAGGGAATCCAATCCTCCTTCGGCGTAATGCCTGACGAGCTGCTGTGTGGTTTACTGGTTT
GTATGTTTNCAGGTTGCAGCAATTCATTTAGAATTAAGGCTGGTCGTGATGGCCTCTTCAATGTAGCCAGAAGCTNTCAG
CACTGGCACTATGTAGAAGCATTGCATGATGNGCAAGTTGATTTGCTGGCTTCTTGACCTGNATTTACATGCTGTGCTCC
GGTGTTGGTAACTTGCGTTCATTAGAAATTGTCACTAGGGAGTCTTTTTCTATGGGGAAAATAAATCAAGGTAGAGGAGC
CAACGTGATAGCCAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48959.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis