Browse Element(s) Details


Os.49073.1.S1_at

Description gb:CR280059
DB_XREF= gi:44666625
DB_XREF=CR280059
CLONE=p627c11p3
TID=Os.49073.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49073 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) 3-methyl-2-oxobutanoate hydroxy-methyl-transferase-like protein (P0492F05.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1257011/113-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g12530Os.45987.1.S1_x_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530OsAffx.23218.1.S1_at11/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.21207.1.S1_at7/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12530Os.9825.1.S1_at1/111+6886153..6893212Smr domain containing protein, expressed
LOC_Os01g12540Os.46746.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_x_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12540Os.5405.1.S1_at11/111+6894373..6901034small GTP-binding protein domain containing protein, expressed
LOC_Os01g12550Os.23664.1.S1_at6/111+6901308..6906298expressed protein
LOC_Os01g12560Os.27142.1.S1_at11/111+6906511..69089333-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12570Os.49073.1.S1_at11/111+6909509..69118533-methyl-2-oxobutanoate hydroxymethyltransferase family protein, expressed
LOC_Os01g12580Os.1205.1.S1_at11/111+6918942..6919498Late embryogenesis abundant protein Lea14-A, putative, expressed
LOC_Os01g12590NANA1+6924803..6930956retrotransposon protein, putative, unclassified
LOC_Os01g12600NANA1+6931584..6935002retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015940biological_processpantothenate biosynthesis
GO:0003864molecular_function3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49073.1.S1_at--786--7631Chr01:6910060..6910084 (25 bp)
GGGACGTGATTAACAGAGCTCTATC
LOC_Os01g12570
Os.49073.1.S1_at--52--5151Chr01:6910026..6910050 (25 bp)
GCAAGAGGTGGAAACCCAGTCTTTT
LOC_Os01g12570
Os.49073.1.S1_at--203--7131Chr01:6910008..6910032 (25 bp)
GTCTTTTCCGGGTCCTAGTCACACG
LOC_Os01g12570
Os.49073.1.S1_at--132--1171Chr01:6909992..6910016 (25 bp)
AGTCACACGCCCTACAAACTAGCTG
LOC_Os01g12570
Os.49073.1.S1_at--809--9191Chr01:6909954..6909978 (25 bp)
TGCCTTTCTGAATGCGCTGAAGATG
LOC_Os01g12570
Os.49073.1.S1_at--3--4291Chr01:6909924..6909948 (25 bp)
CCTGAATGTGGCTGCTGATGCTGCA
LOC_Os01g12570
Os.49073.1.S1_at--1068--4511Chr01:6909855..6909879 (25 bp)
GCCGCAGCTCAAGGTCTATGCTTGA
LOC_Os01g12570
Os.49073.1.S1_at--14--651Chr01:6909838..6909862 (25 bp)
ATGCTTGATTGTTCCTAGCTAGCTA
LOC_Os01g12570
Os.49073.1.S1_at--728--6111Chr01:6909727..6909751 (25 bp)
GAGTGAAGACCCATCAAGTGTTATG
LOC_Os01g12570
Os.49073.1.S1_at--714--1111Chr01:6909711..6909735 (25 bp)
AGTGTTATGATCTTCTTTAGGTGTA
LOC_Os01g12570
Os.49073.1.S1_at--724--7651Chr01:6909610..6909634 (25 bp)
GGGAGTGCACTCAAACCTATCAGAT
LOC_Os01g12570
Target Sequence 
GGGACGTGATTAACAGAGCTCTATCAAAGTACAAGCAAGAGGTGGAAACCCAGTCTTTTCCGGGTCCTAGTCACACGCCC
TACAAACTAGCTGCCACAGATGTTGATGCCTTTCTGAATGCGCTGAAGATGAAGGGCCTGAATGTGGCTGCTGATGCTGC
AGCCGATGCTGTTGAATATACAGATGAGAAAGAGATANATGGAACGCCGCAGCTCAAGGTCTATGCTTGATTGTTCCTAG
CTAGCTAGCAATGGATGAATAGCAATATGGTTTGATTTATCGCAAAATAAATAAATGATTTGGTTGCTGAATGAAGCTGA
ATCTGAATCTGAAGAGTGAAGACCCATCAAGTGTTATGATCTTCTTTAGGTGTATTTGACCATGGATGCATGGGGATTTC
TTATTTTTTNAGGAAGTATAACGTGAGTGTTGTATGCATGAAGTATGTATGGGGAGTGCACTCAAACCTATCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49073.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis