Browse Element(s) Details


Os.49130.1.S1_x_at

Description gb:AK101963.1
DB_XREF= gi:32987172
TID=Os.49130.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49130 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033076D23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076D23, full insert sequence.
FL= gb:AK101963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3254411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49130.1.S1_x_at--1113--10531Chr12:19615237..19615261 (25 bp)
TTCATCAGCGCGTGGATCCAGTATT
LOC_Os12g32544
Os.49130.1.S1_x_at--445--6872Chr12:19615257..19615382 (25 bp)
GTATTGATCATCTTCTGCTCGGTGC
LOC_Os12g32544
Os.49130.1.S1_x_at--336--3571Chr12:19615388..19615412 (25 bp)
CATTCCCCAAGACCTTAGTTTGCAG
LOC_Os12g32544
Os.49130.1.S1_x_at--145--5812Chr12:19615398..19615422 (25 bp)
GACCTTAGTTTGCAGTGTCGTGAAC
LOC_Os12g32544
Os.49130.1.S1_x_at--1130--151Chr12:19616252..19616276 (25 bp)
ATTTAAGGACCTTTGCTGTGCGGCT
LOC_Os12g32544
Os.49130.1.S1_x_at--1149--3991Chr12:19616587..19616611 (25 bp)
CGTCGGCAGGCTACTGGGCAAGCTA
LOC_Os12g32544
Os.49130.1.S1_x_at--435--5891Chr12:19616627..19616651 (25 bp)
GAGCTGGGAGGCTGATATTCTCCCT
LOC_Os12g32544
Os.49130.1.S1_x_at--127--3851Chr12:19616660..19616684 (25 bp)
CTGCTTCTATGGCTGACAGAGGATG
LOC_Os12g32544
Os.49130.1.S1_x_at--317--3751Chr12:19616734..19616758 (25 bp)
CTCATTATTTTTCAGGCGTTGCCTG
LOC_Os12g32544
Os.49130.1.S1_x_at--982--4631Chr12:19616749..19616773 (25 bp)
GCGTTGCCTGATTTTCTCTAATTGT
LOC_Os12g32544
Os.49130.1.S1_x_at--1074--7691Chr12:19616880..19616904 (25 bp)
GGGTCTTTTCTTTATGTGCAATAGT
LOC_Os12g32544
Target Sequence 
TTCATCAGCGCGTGGATCCAGTATTGATCATCTTCTGCTCGGTGCCATTCCATTCCCCAAGACCTTAGTTTGCAGTGTCG
TGAACTGAACAAATCCTACGAGAGGCTGGTTCCCATGTGCCTGTAAGAGGCTCCTGGATTTGAAAGCCTGGTGTTACCAA
CTAGAGATTATCTTTGTATATTTAAGGACCTTTGCTGTGCGGCTGACTTCGTTCAAAGGGGCAGGCCACCGTCGGCAGGC
TACTGGGCAAGCTAGGATGCATGAGCTTGGAGCTGGGAGGCTGATATTCTCCCTCCTGTTCTCTGCTTCTATGGCTGACA
GAGGATGAGATAAAGTGGAGTTGGGGGCAAGTGAGGACTGTGAGGGTATGAGCTACCTCATTATTTTTCAGGCGTTGCCT
GATTTTCTCTAATTGTTAACTTATATGTCATTCTTTAGTTTTAGAGTGTTTCTATAGGTGTAATTCACTCAATATGTATT
TATATTACTCCTTTCTTGAGCAAATATGTAGGAACAGAAAAGGGGTCTTTTCTTTATGTGCAATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49130.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis