Browse Element(s) Details


Os.49140.1.S2_at

Description gb:AK063417.1
DB_XREF= gi:32973435
TID=Os.49140.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49140 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-C01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B10, full insert sequence.
FL= gb:AK107480.1 gb:AK063417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g5037011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g50330Os.50510.1.S1_at10/115+28755137..28757443expressed protein
LOC_Os05g50330OsAffx.31487.1.S1_at3/115+28755137..28757443expressed protein
LOC_Os05g50340OsAffx.15178.1.S1_s_at11/115+28761815..28762852RADIALIS, putative, expressed
LOC_Os05g50350NANA5+28765219..28767070myb family transcription factor, putative
LOC_Os05g50360Os.2307.1.S1_at10/115+28771550..28774546Anaphase promoting complex subunit 10, putative, expressed
LOC_Os05g50370Os.49140.1.S1_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.49140.1.S2_at11/115+28780789..28787782expressed protein
LOC_Os05g50370Os.27848.1.S1_at1/115+28780789..28787782expressed protein
LOC_Os05g50380Os.4166.1.S1_at11/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50380Os.53740.1.S1_s_at1/115+28788522..28794005Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplast precursor, putative, expressed
LOC_Os05g50390Os.56966.1.S1_at11/115+28797244..28798104expressed protein
LOC_Os05g50400OsAffx.15180.1.S1_at11/115+28800293..28801144hypothetical protein
LOC_Os05g50410Os.33045.1.S1_a_at11/115+28806350..28813611N terminus of Rad21/Rec8 like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49140.1.S2_at--129--6031Chr05:28786451..28786475 (25 bp)
GAGAGGCATCAACGCACAGCTGAGC
LOC_Os05g50370
Os.49140.1.S2_at--778--5371Chr05:28786595..28786619 (25 bp)
GAAGAACATGCGTGACCTGCTGGCG
LOC_Os05g50370
Os.49140.1.S2_at--1002--7911Chr05:28786732..28786756 (25 bp)
GGTTGTCTGAGTACCTAGATCCTGA
LOC_Os05g50370
Os.49140.1.S2_at--777--8151Chr05:28786785..28786809 (25 bp)
GGAAATCTGCGAGCCTTGTTATCCA
LOC_Os05g50370
Os.49140.1.S2_at--394--5871Chr05:28786795..28786819 (25 bp)
GAGCCTTGTTATCCACATTGCAATA
LOC_Os05g50370
Os.49140.1.S2_at--149--10191Chr05:28786928..28786949 (22 bp)
TATATTCTTGGAGCTGACAGTGGTT
LOC_Os05g50370
Os.49140.1.S2_at--1037--4411Chr05:28786954..28786978 (25 bp)
GCCAGTGCCACTTACAGAGCTAATT
LOC_Os05g50370
Os.49140.1.S2_at--973--3411Chr05:28786968..28786992 (25 bp)
CAGAGCTAATTACAGCTGCTGCTGT
LOC_Os05g50370
Os.49140.1.S2_at--141--7471Chr05:28787022..28787046 (25 bp)
GTGTCCATCCAGATAAATTACAGCA
LOC_Os05g50370
Os.49140.1.S2_at--614--711Chr05:28787725..28787749 (25 bp)
ATGATGATGACGCTCGTCGCTCCTT
LOC_Os05g50370
Os.49140.1.S2_at--1122--9391Chr05:28787738..28787762 (25 bp)
TCGTCGCTCCTTGAATCGATTCAAT
LOC_Os05g50370
Target Sequence 
GAGAGGCATCAACGCACAGCTGAGCGTGTGACAAAAGCACTAGCTGAGAAGAACATGCGTGACCTGCTGGCGCAAAGAGA
GCAAGCAGAGAAACATAGGTTGTCTGAGTACCTAGATCCTGAGATCAAGAGATGGTCAAACGGAAAGGAAGGAAATCTGC
GAGCCTTGTTATCCACATTGCAATATATTCTTGGAGCTGACAGTGGTTGGCAGCCAGTGCCACTTACAGAGCTAATTACA
GCTGCTGCTGTGAAGAAAGCCTACAGGAAGGCANCCCTTTGTGTCCATCCAGATAAATTACAGCAAAGGGGTGCTACAAT
CAGACAGAAATACATATGCGAGAAGGTTTTTGATCTTCTTAAGGATGCTTGGAACAAGTTCNCNTCGGAGGAGCGCTAGG
ATGGATGCTGAAACAGCCGATTTATTTTCGAGACAGGAAATTCGTTAGTAATTATATAGCCATATTGTTAGTTTGTTAAT
TCAATATTGGTGTAAATATGCAGTTCTAGATATCTTGCTAGATGATGATGACGCTCGTCGCTCCTTGAATCGATTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49140.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis