Browse Element(s) Details


Os.49344.1.S1_at

Description gb:AK106913.1
DB_XREF= gi:32992122
TID=Os.49344.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49344 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-A09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-A09, full insert sequence.
FL= gb:AK106913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0157010/11kinesin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g01510Os.810.1.S1_at11/111+258332..265273expressed protein
LOC_Os01g01510Os.810.2.S1_x_at10/111+258332..265273expressed protein
LOC_Os01g01510Os.810.3.S1_x_at5/111+258332..265273expressed protein
LOC_Os01g01520Os.9784.1.S1_at11/111+266948..271886Transferase family protein, expressed
LOC_Os01g01530NANA1+273087..274683transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01540NANA1+276784..277296hypothetical protein
LOC_Os01g01550NANA1+277648..280726transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g01560Os.34131.1.S1_s_at10/111+281713..283848hAT family dimerisation domain containing protein
LOC_Os01g01570OsAffx.23085.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01570Os.49344.1.S1_at10/111+286324..289329kinesin heavy chain, putative, expressed
LOC_Os01g01580Os.27860.3.S1_at1/111+289649..290131hypothetical protein
LOC_Os01g01590OsAffx.10250.3.S1_at10/111+290450..291338expressed protein
LOC_Os01g01600Os.45859.2.S1_x_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.2.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600Os.45859.1.S1_at10/111+300035..303538expressed protein
LOC_Os01g01600OsAffx.24066.1.S1_x_at1/111+300035..303538expressed protein
LOC_Os01g01610Os.35606.2.S1_x_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.2.S1_at11/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01610Os.35606.1.S1_at10/111+303673..305644Iron-sulfur cluster assembly accessory protein, expressed
LOC_Os01g01620Os.996.1.S1_at10/111+306322..309972Ribokinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007017biological_processmicrotubule-based process
GO:0007112biological_processmale meiosis cytokinesis
GO:0010245biological_processradial microtubular system formation
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49344.1.S1_at--1162--7391NONE
GTGATAATCAGCCATAAGGCTTCGG
NONE
Os.49344.1.S1_at--87--1031Chr01:288905..288929 (25 bp)
AGGTAGCAAGCACCCTGACTGGCCA
LOC_Os01g01570
Os.49344.1.S1_at--102--5731Chr01:288921..288945 (25 bp)
GACTGGCCAGCGGAAAACGAGGAAC
LOC_Os01g01570
Os.49344.1.S1_at--337--6191Chr01:288939..288963 (25 bp)
GAGGAACATATATAGCAGTGGCAGC
LOC_Os01g01570
Os.49344.1.S1_at--1116--4351Chr01:288980..289004 (25 bp)
CCAGCGCCGAAGAGGATCGTGAAGC
LOC_Os01g01570
Os.49344.1.S1_at--5--5791Chr01:289006..289030 (25 bp)
GACGAGCCGCGTGAAACACATGCTT
LOC_Os01g01570
Os.49344.1.S1_at--878--5531Chr01:289018..289042 (25 bp)
GAAACACATGCTTGGAGCCGATCCA
LOC_Os01g01570
Os.49344.1.S1_at--571--5871Chr01:289032..289056 (25 bp)
GAGCCGATCCAAGCAAATTGCTCGA
LOC_Os01g01570
Os.49344.1.S1_at--550--5131Chr01:289044..289068 (25 bp)
GCAAATTGCTCGATTCGTGGCATGT
LOC_Os01g01570
Os.49344.1.S1_at--130--9431Chr01:289058..289082 (25 bp)
TCGTGGCATGTTTTGCTGAGTCTAA
LOC_Os01g01570
Os.49344.1.S1_at--1--4751Chr01:289072..289096 (25 bp)
GCTGAGTCTAAGCATGACGTACTTA
LOC_Os01g01570
Target Sequence 
GTGATAATCAGCCATAAGGCTTCGGGGTGGCCAGGGGGCGACGGAGGTAGCAAGCACCCTGACTGGCCAGCGGAAAACGA
GGAACATATATAGCAGTGGCAGCGGGAGATGTGGGAGGGCCAGCGCCGAAGAGGATCGTGAAGCCGACGAGCCGCGTGAA
ACACATGCTTGGAGCCGATCCAAGCAAATTGCTCGATTCGTGGCATGTTTTGCTGAGTCTAAGCATGACGTACTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis