Browse Element(s) Details


Os.4938.1.S1_at

Description gb:AK070319.1
DB_XREF= gi:32980343
TID=Os.4938.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4938 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023050M24, full insert sequence.
FL= gb:AK071753.1 gb:AK070319.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5460011/11uncharacterized plant-specific domain TIGR01570 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g54550OsAffx.4175.1.S1_at11/114+32226334..32226864expressed protein
LOC_Os04g54560Os.49525.1.S1_at8/114+32229429..32231261Transferase family protein, expressed
LOC_Os04g54564Os.53855.1.S1_at11/114+32231463..32232743expressed protein
LOC_Os04g54570Os.49525.1.S1_at1/114+32234201..32236150Transferase family protein
LOC_Os04g54580OsAffx.26603.1.S1_at11/114+32237998..32238579hypothetical protein
LOC_Os04g54590Os.5585.1.S1_at11/114+32240544..32241434expressed protein
LOC_Os04g54600Os.4938.1.S1_at11/114+32245869..32246997uncharacterized plant-specific domain TIGR01570 family protein, expressed
LOC_Os04g54610Os.11471.1.S1_at8/114+32257548..32258515hypothetical protein
LOC_Os04g54610OsAffx.26604.1.S1_at5/114+32257548..32258515hypothetical protein
LOC_Os04g54620Os.12999.1.S1_at11/114+32259622..32260550expressed protein
LOC_Os04g54630Os.11651.1.S1_at11/114+32261944..32263284expressed protein
LOC_Os04g54640Os.24768.1.S1_x_at11/114+32263959..32266419expressed protein
LOC_Os04g54640OsAffx.4176.1.S1_at11/114+32263959..32266419expressed protein
LOC_Os04g54640Os.7327.1.S1_a_at1/114+32263959..32266419expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4938.1.S1_at--876--7311Chr04:32246606..32246630 (25 bp)
GTGCTCGAGGAGTCCATGTGGACCA
LOC_Os04g54600
Os.4938.1.S1_at--506--8091Chr04:32246625..32246649 (25 bp)
GGACCATGTCCTGCAACGGCAAGAA
LOC_Os04g54600
Os.4938.1.S1_at--367--5672Chr11:12542876..12542895 (20 bp)
GACATCGCCGTGCTGGAGACTCTGT
NONE
Os.4938.1.S1_at--885--9091Chr04:32246736..32246760 (25 bp)
TGCTCCCCGGGATCTCGGACATGGA
LOC_Os04g54600
Os.4938.1.S1_at--461--611Chr04:32246786..32246810 (25 bp)
ATGCGTGGGAGCTTCGAGCACATCA
LOC_Os04g54600
Os.4938.1.S1_at--488--2092Chr04:32246805..32246829 (25 bp)
ACATCATCGGCTCCAGGAACTCGGA
LOC_Os04g54600
Os.4938.1.S1_at--1093--3471Chr04:32246818..32246842 (25 bp)
CAGGAACTCGGAGTCGCTCTACATG
LOC_Os04g54600
Os.4938.1.S1_at--733--4491Chr04:32246876..32246900 (25 bp)
GCCGTGTTCTTCGTGAGGCTATGAA
LOC_Os04g54600
Os.4938.1.S1_at--980--2231Chr04:32246899..32246923 (25 bp)
AAATTAATACACCACGCGCGTGCAT
LOC_Os04g54600
Os.4938.1.S1_at--936--7331Chr04:32246918..32246942 (25 bp)
GTGCATGGCCATCTCTGTTTATTTT
LOC_Os04g54600
Os.4938.1.S1_at--1145--9931Chr04:32246958..32246982 (25 bp)
TACCTCCGGCCACAAATACACATTT
LOC_Os04g54600
Target Sequence 
GTGCTCGAGGAGTCCATGTGGACCATGTCCTGCAACGGCAAGAAGGTGGGGTACGCGGTGCGGCGAGACCCGACCGACGA
CGACATCGCCGTGCTGGAGACTCTGTGGGCGGTGTCCATGGGCGGCGGCGTGCTCCCCGGGATCTCGGACATGGACGGGA
AAGACGGCGAGATGGCGTACATGCGTGGGAGCTTCGAGCACATCATCGGCTCCAGGAACTCGGAGTCGCTCTACATGATC
AGCCCGCACGGCGGCGACTGCCCGGAGCTCGCCGTGTTCTTCGTGAGGCTATGAAATTAATACACCACGCGCGTGCATGG
CCATCTCTGTTTATTTTTTTAAAATCTCTTGCTACCTCCGGCCACAAATACACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis