Browse Element(s) Details


Os.49434.1.S1_at

Description gb:AK107101.1
DB_XREF= gi:32992310
TID=Os.49434.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49434 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-122-A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A04, full insert sequence.
FL= gb:AK107101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4013010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40080Os.26899.1.A1_at11/1111+23401288..23407870lipin, N-terminal conserved region family protein, expressed
LOC_Os11g40090Os.9751.1.S1_at11/1111+23408541..23411972expressed protein
LOC_Os11g40100Os.8848.1.S1_at11/1111+23412375..23415910SSXT protein containing protein, expressed
LOC_Os11g40110OsAffx.26812.3.S1_at11/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40110OsAffx.26812.2.S1_x_at6/1111+23424709..23427715NIN-like protein 2, putative
LOC_Os11g40120OsAffx.19268.1.S1_at11/1111+23429701..23430462hypothetical protein
LOC_Os11g40130Os.49434.1.S1_at10/1111+23432797..23434050expressed protein
LOC_Os11g40140Os.3705.1.S1_at11/1111+23436916..23441219Proteasome subunit alpha type 5, putative, expressed
LOC_Os11g40150Os.57536.1.S1_at11/1111+23441360..23445273DNA repair protein RAD51 homolog A, putative, expressed
LOC_Os11g40160Os.51651.1.A1_at11/1111+23445716..23447986expressed protein
LOC_Os11g40170OsAffx.7363.1.S1_at11/1111+23451404..23451835hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49434.1.S1_at--605--8691Chr11:23433504..23433528 (25 bp)
TGTCTCCAATTGAGTACTCCCTCCA
LOC_Os11g40130
Os.49434.1.S1_at--304--6231Chr11:23433559..23433583 (25 bp)
GATGTTCTACTACAACAAATCCTAG
LOC_Os11g40130
Os.49434.1.S1_at--1120--116Chr11:23433587..23433611 (25 bp)
ATTCAGATTCGTTGTACTGGATGGA
LOC_Os11g40130
Os.49434.1.S1_at--680--10031Chr11:23433619..23433643 (25 bp)
TAGGACAATAAATCGGTTGCCATAT
LOC_Os11g40130
Os.49434.1.S1_at--525--7711Chr11:23433671..23433695 (25 bp)
GGGTGAACGTGACATATTCTAAGAC
LOC_Os11g40130
Os.49434.1.S1_at--720--3711Chr11:23433703..23433727 (25 bp)
CTAGACAAATTCTCTTACCAGATTT
LOC_Os11g40130
Os.49434.1.S1_at--21--7991NONE
GGATGCGTATTTCCATTTACTAGTA
NONE
Os.49434.1.S1_at--107--10351Chr11:23433801..23433825 (25 bp)
TTTACTAGTACATGGTCTTCTTAAG
LOC_Os11g40130
Os.49434.1.S1_at--354--7151Chr11:23433815..23433839 (25 bp)
GTCTTCTTAAGTACCACGATTTGTT
LOC_Os11g40130
Os.49434.1.S1_at--988--10791Chr11:23433835..23433859 (25 bp)
TTGTTAACATAACATGGCACCCATG
LOC_Os11g40130
Os.49434.1.S1_at--294--8191Chr11:23433870..23433894 (25 bp)
GGAAGAAATCCCACATCATGAAGTA
LOC_Os11g40130
Target Sequence 
TGTCTCCAATTGAGTACTCCCTCCATCATAAAATTTTTATAGCAATCTTANANCGGATGTTCTACTACAACAAATCCTAG
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTCAGATTCGTTGTACTGGATGGANACATNCTAGGACAATAAATCGG
TTGCCATATTTTGNGACGGANNGANNAANGTATTTTGGGTGAACGTGACATATTCTAAGACAATAAAGCTAGACAAATTC
TCTTACCAGATTTATTGNACNAATGTGACATATGCACCTAAAATTTCTTATANTTTTCACAATGAATGCAACTAAATNTN
NNNNNNNNNAGGATGCGTATTTCCATTTACTAGTACATGGTCTTCTTAAGTACCACGATTTGTTAACATAACATGGCACC
CATGACAAACAATGGGAAGAAATCCCACATCATGAAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49434.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis