Browse Element(s) Details


Os.49622.1.S1_at

Description gb:AK058879.1
DB_XREF= gi:32968897
TID=Os.49622.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49622 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) isolate 29942 zinc finger POZ domain protein mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-A05, full insert sequence.
FL= gb:AK058879.1 gb:AK100829.1 gb:AK068848.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5785411/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g57790Os.5502.1.S1_at11/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57790Os.54270.1.S1_at1/113+32868891..32874441Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os03g57799Os.26886.3.S1_x_at3/113+32877074..32878442transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808Os.26886.1.S1_x_at6/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57808OsAffx.16244.1.S1_x_at1/113+32878593..32880371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.6.S1_s_at9/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820Os.26886.2.S1_s_at8/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.16467.1.S1_at7/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57820OsAffx.3425.1.S1_at1/113+32883275..32886369transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g57830OsAffx.13534.1.S1_at11/113+32887148..32889829hypothetical protein
LOC_Os03g57830OsAffx.20869.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57830Os.50619.1.S1_at1/113+32887148..32889829hypothetical protein
LOC_Os03g57840Os.8686.1.S1_at11/113+32890478..32895823Sterol-regulatory element binding protein site 2 protease containing protein, expressed
LOC_Os03g57854Os.49622.1.S1_at11/113+32896843..32903489BTB/POZ domain containing protein, expressed
LOC_Os03g57870Os.28012.1.S1_at9/113+32903614..32906711Activator 1 38 kDa subunit, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_s_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57880OsAffx.25749.1.S1_at11/113+32909830..32912190Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os03g57890Os.12059.1.S1_at11/113+32913214..32915847AN1-like Zinc finger family protein, expressed
LOC_Os03g57900Os.49768.1.S1_at11/113+32921106..32921903AN1-like Zinc finger family protein, expressed
LOC_Os03g57910Os.52448.1.S1_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.1.S1_x_at11/113+32923450..32925085expressed protein
LOC_Os03g57910Os.52448.2.S1_at5/113+32923450..32925085expressed protein
LOC_Os03g57920Os.55594.1.S1_at11/113+32925978..32927052AN1-like Zinc finger family protein, expressed
LOC_Os03g57930OsAffx.13535.1.S1_at11/113+32927968..32928849expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49622.1.S1_at--430--8831Chr03:32902975..32902999 (25 bp)
TGATTACCTCAAAGACAACTGCCCC
LOC_Os03g57854
Os.49622.1.S1_at--540--491Chr03:32903008..32903032 (25 bp)
ATCGGAGATACTGAGGACGGTCGCC
LOC_Os03g57854
Os.49622.1.S1_at--130--1991Chr03:32903148..32903172 (25 bp)
ACTGCTATGCCAAAAGCGGCTTGTT
LOC_Os03g57854
Os.49622.1.S1_at--249--4771Chr03:32903199..32903223 (25 bp)
GCTGCTGTACAAATGGGACGGCTAA
LOC_Os03g57854
Os.49622.1.S1_at--736--1931Chr03:32903216..32903240 (25 bp)
ACGGCTAATTGGTTTGTGGCGACAT
LOC_Os03g57854
Os.49622.1.S1_at--377--1531Chr03:32903251..32903275 (25 bp)
AGCATCAGTCTGTTATACTACCCCT
LOC_Os03g57854
Os.49622.1.S1_at--1064--9891Chr03:32903266..32903290 (25 bp)
TACTACCCCTACATTCGTTCAAATT
LOC_Os03g57854
Os.49622.1.S1_at--996--8571Chr03:32903299..32903323 (25 bp)
TGGTTTGGGCAGTAGCTCCGCAGAT
LOC_Os03g57854
Os.49622.1.S1_at--826--3391Chr03:32903373..32903397 (25 bp)
CAGCTATTCTAGTTTCGATTTGCAA
LOC_Os03g57854
Os.49622.1.S1_at--35--9491Chr03:32903427..32903451 (25 bp)
TCTGACTGAATAGCGTGCATCGTAT
LOC_Os03g57854
Os.49622.1.S1_at--133--9391Chr03:32903446..32903470 (25 bp)
TCGTATGCTAGCTTTCGTCACAGAT
LOC_Os03g57854
Target Sequence 
TGATTACCTCAAAGACAACTGCCCCGCGCTGCAATCGGAGATACTGAGGACGGTCGCCGGGTGTGAGGAGGAATGCAGCA
GCGGAGGGAAGAGCCAGAGCGTGTGGGGGCAGCTCTCGGATGGCGGCGATACCAGCGGGCGCAGGGTGAGGCCAAGGGTC
TGNAACACCCAGCCACTGCTATGCCAAAAGCGGCTTGTTTTAAAGTGTAACTGTGTAAGCGAATTGCTGCTGTACAAATG
GGACGGCTAATTGGTTTGTGGCGACATTTAAAATAATAGCATCAGTCTGTTATACTACCCCTACATTCGTTCAAATTTCA
ATAGCTGGTTTGGGCAGTAGCTCCGCAGATGGAAGGGATTATGTTTAGTNATNTGAGACAGTGATGTGTAGTCAGTAGTC
AGCTATTCTAGTTTCGATTTGCAATTTATAAACTTCAGTTTTTAGCCTGCNGATCTGACTGAATAGCGTGCATCGTATGC
TAGCTTTCGTCACAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis