Browse Element(s) Details


Os.49623.1.A1_at

Description gb:AK108932.1
DB_XREF= gi:32994141
TID=Os.49623.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-153-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-153-A08, full insert sequence.
FL= gb:AK108932.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4886011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48790Os.8968.2.S1_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.8968.1.S1_x_at11/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48790Os.48165.1.A1_at9/112+29853420..29861569AML1, putative, expressed
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49623.1.A1_at--432--9271Chr02:29884910..29884934 (25 bp)
TCCTGCTGATCGATCCATCCTAACA
LOC_Os02g48860
Os.49623.1.A1_at--820--1791Chr02:29884939..29884963 (25 bp)
ACCCACGACAGTATTCTTCTTTAGT
LOC_Os02g48860
Os.49623.1.A1_at--704--7031Chr02:29885012..29885036 (25 bp)
GTACACGAGGATGATAGGCGCATAT
LOC_Os02g48860
Os.49623.1.A1_at--864--8271Chr02:29885096..29885120 (25 bp)
GGCATAGTACTTTCGTTAGTGGATA
LOC_Os02g48860
Os.49623.1.A1_at--7--10491Chr02:29885153..29885177 (25 bp)
TTAAACGGGCTAACCATGTGCACGT
LOC_Os02g48860
Os.49623.1.A1_at--975--771Chr02:29885168..29885192 (25 bp)
ATGTGCACGTGTTAGGCGCTTGACA
LOC_Os02g48860
Os.49623.1.A1_at--1063--7111Chr02:29885219..29885243 (25 bp)
GTCAGTGGCACGGTGCTCAACTGAT
LOC_Os02g48860
Os.49623.1.A1_at--684--4831Chr02:29885233..29885257 (25 bp)
GCTCAACTGATGTGCTACGACTAAA
LOC_Os02g48860
Os.49623.1.A1_at--679--1751Chr02:29885306..29885330 (25 bp)
ACCTCGTTCTGTTGTGCATTGTGGC
LOC_Os02g48860
Os.49623.1.A1_at--755--4131Chr02:29885338..29885362 (25 bp)
GCCCAAGGCCCAGAGAGAAAACGTT
LOC_Os02g48860
Os.49623.1.A1_at--802--6631Chr02:29885411..29885435 (25 bp)
GTTGTTAGCCGAACATTCACCTGAT
LOC_Os02g48860
Target Sequence 
TCCTGCTGATCGATCCATCCTAACAACTNACCCACGACAGTATTCTTCTTTAGTACGTACATGGCGTATAGGTGTATAGA
TATACGCGTACAATGTACGTACGTACACGAGGATGATAGGCGCATATACATAACATAACACTAGTAGTAGGAGAGTACAT
AGTACACAAATACACAAAGGTTGTAAGGCATAGTACTTTCGTTAGTGGATATACGATTTTTGAGAGTAATAATAATAAAT
TAGTTAAACGGGCTAACCATGTGCACGTGTTAGGCGCTTGACACGCTTGGTTTGATTTGGTGCGTCGTGGTCAGTGGCAC
GGTGCTCAACTGATGTGCTACGACTAAAAGTCTAAAACTAGTGGACAGTTAGGGGGACGTGTGGGACTGTGGGGCCACCT
CGTTCTGTTGTGCATTGTGGCTGCTGTGGCCCAAGGCCCAGAGAGAAAACGTTATCTTTTTTTTTAATCTCGTAGATAAT
GCTGGATCTGTATTGTTGATGGTTGTTAGCCGAACATTCACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49623.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis