Browse Element(s) Details


Os.49739.1.S1_at

Description gb:AK059731.1
DB_XREF= gi:32969749
TID=Os.49739.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49739 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-201-G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G01, full insert sequence.
FL= gb:AK059731.1 gb:AK120281.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2267010/11triacylglycerol Lipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22634OsAffx.3297.1.S1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.26852.1.A1_at11/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634OsAffx.6281.1.S1_at2/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22634Os.12629.1.S2_at1/113+13035620..13050306terpene synthase 7, putative, expressed
LOC_Os03g22650NANA3+13057480..13058058hypothetical protein
LOC_Os03g22670Os.49739.1.S2_at11/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22670Os.49739.1.S1_at10/113+13066237..13072596triacylglycerol Lipase, putative, expressed
LOC_Os03g22680Os.49023.1.S1_x_at11/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22680Os.53636.1.S1_at4/113+13074632..13077118CHY zinc finger family protein, expressed
LOC_Os03g22690Os.11847.1.S1_at11/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22690Os.32544.1.S1_at1/113+13079157..13088173nucleoporin interacting component, putative, expressed
LOC_Os03g22700Os.53969.1.S1_at11/113+13089745..13094569Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49739.1.S1_at--85--8571Chr03:13071372..13071396 (25 bp)
TGGTTTCAACCTTACACTTGCCAAG
LOC_Os03g22670
Os.49739.1.S1_at--27--8051Chr03:13071049..13071363 (25 bp)
GGAGTATGCCTCAGCTGTCTATATG
LOC_Os03g22670
Os.49739.1.S1_at--791--1371Chr03:13070864..13070888 (25 bp)
AGACGTCTAATCGTTGATGTCCAGA
LOC_Os03g22670
Os.49739.1.S1_at--519--5011Chr03:13070738..13070761 (24 bp)
GCAGGCATTTGTTGGTGTCGATCAC
LOC_Os03g22670
Os.49739.1.S1_at--993--7451Chr03:13070724..13070748 (25 bp)
GTGTCGATCACAATCTCAACGCTAT
LOC_Os03g22670
Os.49739.1.S1_at--1111--1451Chr03:13070540..13070564 (25 bp)
AGCAATCTGATCTGAACTACCCGGA
LOC_Os03g22670
Os.49739.1.S1_at--1024--9711Chr03:13070279..13070303 (25 bp)
TCAATGGGAGGAGCGCTTGCTTCTT
LOC_Os03g22670
Os.49739.1.S1_at--285--2071NONE
ACTTGATCTTGCGATTACCCATGGA
NONE
Os.49739.1.S1_at--669--9971Chr03:13069912..13069936 (25 bp)
TACCTGATGACTTTTGGGCAGCCGC
LOC_Os03g22670
Os.49739.1.S1_at--579--2591Chr03:13069879..13069903 (25 bp)
AACGCTGCATTTGCATCCTACTTTA
LOC_Os03g22670
Os.49739.1.S1_at--667--5931Chr03:13069819..13069843 (25 bp)
GAGCATGACATTGTGCCGCATTTGC
LOC_Os03g22670
Target Sequence 
TGGTTTCAACCTTACACTTGCCAAGACTATTGTGGAGTATGCCTCAGCTGTCTATATGACAGATCTAACAGAGCTCTATA
CATGGACATGCTCAAAATGCAATGACTTAATCCAAGGGTTCGAGATGAGACGTCTAATCGTTGATGTCCAGAACTGCTTG
CAGGCATTTGTTGGTGTCGATCACAATCTCAACGCTATCATTGTTTCAATCAGGGGAACTCAAGAGAACAGTGTACAGAA
TTGGATTAAGGATATGCTATGGAAGCAATCTGATCTGAACTACCCGGACATGCCCGACGCAAAGCCATCGCAAACGCCGT
TCACAAGGCGAGGAAGTTATATGGAGATATTAGCATAATAGTTACAGGGCATTCAATGGGAGGAGCGCTTGCTTCTTTCT
GTGCACTTGATCTTGCGATTACCCATGGAGGCAACAATGTTTACCTGATGACTTTTGGGCAGCCGCGCGTTGGCAACGCT
GCATTTGCATCCTACTTTACCAAATATGTGCCCAATACAATTCGAGTGACACATGAGCATGACATTGTGCCGCATTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis