Browse Element(s) Details


Os.49802.1.S1_at

Description gb:AK112113.1
DB_XREF= gi:37988776
TID=Os.49802.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-D12, full insert sequence.
FL= gb:AK111648.1 gb:AK112113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2303011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22980OsAffx.1349.1.S1_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22980OsAffx.1349.1.S1_x_at11/117+12965753..12966175retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g22990NANA7+12968312..12969128hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.2.S1_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23010OsAffx.10040.1.S1_x_at11/117+12979582..12980200hypothetical protein
LOC_Os07g23020OsAffx.10039.1.S1_at1/117+12982661..12983472retrotransposon protein, putative, unclassified
LOC_Os07g23030Os.49802.1.S1_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.49802.1.S2_at11/117+12987937..12993843expressed protein
LOC_Os07g23030Os.38764.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030Os.54151.1.S1_x_at1/117+12987937..12993843expressed protein
LOC_Os07g23030OsAffx.28492.1.S1_at1/117+12987937..12993843expressed protein
LOC_Os07g23040NANA7+13000941..13002311retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23050NANA7+13003018..13006776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23060OsAffx.28549.1.S1_s_at11/117+13008128..13009393hypothetical protein
LOC_Os07g23070OsAffx.22722.1.S1_x_at1/117+13010649..13016112retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g23080OsAffx.20628.2.S1_at11/117+13017287..13018624retrotransposon protein, putative, unclassified
LOC_Os07g23080OsAffx.20628.2.S1_x_at11/117+13017287..13018624retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49802.1.S1_at--857--5651Chr07:12990084..12990108 (25 bp)
GACAGTCATCACTTGGGAACACCAG
LOC_Os07g23030
Os.49802.1.S1_at--726--10791Chr07:12989972..12990071 (25 bp)
TTGTTGTGCCTGTCTTGGCCAATAT
LOC_Os07g23030
Os.49802.1.S1_at--779--10691Chr07:12989843..12989867 (25 bp)
TTGCTCAACGGCTAGGGAGTTCCTT
LOC_Os07g23030
Os.49802.1.S1_at--515--6051Chr07:12989827..12989851 (25 bp)
GAGTTCCTTGGATTCCTTGGTTACT
LOC_Os07g23030
Os.49802.1.S1_at--70--10871Chr07:12989811..12989835 (25 bp)
TTGGTTACTGGCTGCGGGTCAATCA
LOC_Os07g23030
Os.49802.1.S1_at--927--6311Chr07:12989748..12989772 (25 bp)
GATGAAGCCGACATCATTTCCCTGG
LOC_Os07g23030
Os.49802.1.S1_at--172--3591Chr07:12989734..12989758 (25 bp)
CATTTCCCTGGCTGTATATCTAGAG
LOC_Os07g23030
Os.49802.1.S1_at--913--5391Chr07:12989631..12989655 (25 bp)
GAAGCTAATCGGCTCTTCATTAATG
LOC_Os07g23030
Os.49802.1.S1_at--552--9411Chr07:12989576..12989600 (25 bp)
TCGGGCTAGGCTCTACTCAAGTGAA
LOC_Os07g23030
Os.49802.1.S1_at--845--10731Chr07:12989507..12989531 (25 bp)
TTGAAGCGTGCCGATTTCCCTAGGG
LOC_Os07g23030
Os.49802.1.S1_at--587--951Chr07:12989456..12989480 (25 bp)
AGGAAATCCGTCAAGCATCTCTCTG
LOC_Os07g23030
Target Sequence 
GACAGTCATCACTTGGGAACACCAGAACATCCACCTCTTGTTGTGCCTGTCTTGGCCAATATGTTTTCCTTTGACGTTAA
ACAGTTCCTAGATGAAGAAGAAGAGGAAACCACCAGTGGAGCCTTGGTCCCTCTTGATGATGATCTCAAGACCAAACTCA
TGGATATTGCTCAACGGCTAGGGAGTTCCTTGGATTCCTTGGTTACTGGCTGCGGGTCAATCAGGGCCAGGTTTGAAGAG
ATCCACCACCAGATCCCAGAAGATGAAGCCGACATCATTTCCCTGGCTGTATATCTAGAGCAACATCGTTTCAAGCTGGA
AAGGGCACAACAAAGAATAGCAGACATGCGCGAGAGAGCTAAACTGGAAGCAACAATCGAAGCTAATCGGCTCTTCATTA
ATGAAAAAAAAGTCAAGCTTGATGAGATGATCGTCGGGCTAGGCTCTACTCAAGTGAACATAGATCGGCTAAAAACCAGG
GAGGCCGAACTAGTAGCTGAGCTTGAAGCGTGCCGATTTCCCTAGGGCTATTGAAGAACAAACGTCTAAATTGAGGAAAT
CCGTCAAGCATCTCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis