Browse Element(s) Details


Os.49881.1.S1_at

Description gb:AK119272.1
DB_XREF= gi:37988895
TID=Os.49881.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-130-B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-B04, full insert sequence.
FL= gb:AK119272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6204011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61970Os.3422.1.S1_at11/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61970Os.57471.1.S1_x_at8/113+35064501..35068284Actin-3, putative, expressed
LOC_Os03g61980NANA3+35070584..35073598Cytochrome P450 family protein, expressed
LOC_Os03g61990Os.12192.1.S1_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g61990Os.12192.1.S2_a_at11/113+35073046..35076279RNA recognition motif family protein, expressed
LOC_Os03g62000OsAffx.13575.1.S1_at11/113+35076809..35077806hypothetical protein
LOC_Os03g62010Os.8517.1.S1_at11/113+35079129..35080131Harpin-induced protein 1 containing protein, expressed
LOC_Os03g62020OsAffx.25793.1.S1_at11/113+35084760..35085389Harpin-induced protein 1 containing protein
LOC_Os03g62030Os.9694.1.S1_at11/113+35086193..35088735expressed protein
LOC_Os03g62040OsAffx.13576.1.S1_s_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.49881.1.S1_at11/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62040Os.54519.1.S1_at1/113+35089271..35092081retrotransposon protein, putative, unclassified, expressed
LOC_Os03g62050OsAffx.13577.1.S1_at11/113+35095123..35096236hypothetical protein
LOC_Os03g62060Os.10435.1.S1_at10/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62060Os.54455.1.S1_at1/113+35099322..35102118amidohydrolase family protein, expressed
LOC_Os03g62070Os.19742.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62070Os.10435.1.S1_at1/113+35103640..35107408IAA-amino acid hydrolase 1, putative, expressed
LOC_Os03g62080Os.52608.1.S1_at11/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62080OsAffx.22644.1.S1_at1/113+35107535..35113012mRNA decapping enzyme, putative, expressed
LOC_Os03g62090Os.4857.1.S1_at10/113+35116690..35122248Cellulose synthase A catalytic subunit 6, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49881.1.S1_at--167--8931Chr03:35091735..35091759 (25 bp)
TGAGCCTCACTCTGCTACTATCATA
LOC_Os03g62040
Os.49881.1.S1_at--976--5511Chr03:35091772..35091796 (25 bp)
GAAAATCTACGCCTGTGGGTCCATC
LOC_Os03g62040
Os.49881.1.S1_at--1041--531Chr03:35091794..35091818 (25 bp)
ATCGCCTTAAGCCAAGCCTTCGCAT
LOC_Os03g62040
Os.49881.1.S1_at--484--1551Chr03:35091842..35091866 (25 bp)
AGCTTAGTTGACATAGCACCCTCCT
LOC_Os03g62040
Os.49881.1.S1_at--768--1491Chr03:35091856..35091880 (25 bp)
AGCACCCTCCTGTCTTGAGTTGCTT
LOC_Os03g62040
Os.49881.1.S1_at--526--8891Chr03:35091871..35091895 (25 bp)
TGAGTTGCTTCTTCCTTTTTTCGTT
LOC_Os03g62040
Os.49881.1.S1_at--99--9571Chr03:35091936..35091960 (25 bp)
TCTTCTTTAATTCTTCTTCCTTTCT
LOC_Os03g62040
Os.49881.1.S1_at--1087--3672Chr03:35091955..35091979 (25 bp)
CTTTCTTCTTGCTTCTCTGTTATTT
LOC_Os03g62040
Os.49881.1.S1_at--45--211Chr03:35091976..35092000 (25 bp)
ATTTGTATTTCTCGCCTATAACTCC
LOC_Os03g62040
Os.49881.1.S1_at--743--10151Chr03:35091992..35092016 (25 bp)
TATAACTCCCTTGCCAGTTTCTGGC
LOC_Os03g62040
Os.49881.1.S1_at--846--6831Chr03:35092008..35092032 (25 bp)
GTTTCTGGCTCGGTCCTTCTTTGAC
LOC_Os03g62040
Target Sequence 
TGAGCCTCACTCTGCTACTATCATACAACAAATCAAGGAAAATCTACGCCTGTGGGTCCATCGCCTTAAGCCAAGCCTTC
GCATCCACATCAACACTTGGGCAGACAAGCTTAGTTGACATAGCACCCTCCTGTCTTGAGTTGCTTCTTCCTTTTTTCGT
TTGTTTCTGTTCCATTTTTTCCATTCTTCTTCTTCTTTCTTTCTTCTTTAATTCTTCTTCCTTTCTTCTTGCTTCTCTGT
TATTTGTATTTCTCGCCTATAACTCCCTTGCCAGTTTCTGGCTCGGTCCTTCTTTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis