Browse Element(s) Details


Os.49963.1.S1_at

Description gb:AK119443.1
DB_XREF= gi:37989066
TID=Os.49963.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49963 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-C07, full insert sequence.
FL= gb:AK119443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4866011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein
LOC_Os06g48710Os.20602.2.S1_x_at9/116+29467259..29469439hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49963.1.S1_at--189--891Chr06:29442692..29442716 (25 bp)
AGGCCGGAACTTACCAGCATTATGC
LOC_Os06g48660
Os.49963.1.S1_at--126--10151Chr06:29442712..29442736 (25 bp)
TATGCCTTCCTGTTGCATCGCAAGA
LOC_Os06g48660
Os.49963.1.S1_at--206--2411Chr06:29442771..29442795 (25 bp)
AAACACAGAACCATGGCACCGTTGT
LOC_Os06g48660
Os.49963.1.S1_at--976--8051Chr06:29442816..29442840 (25 bp)
GGAGAATCGTTGCTGGTCACTGCCA
LOC_Os06g48660
Os.49963.1.S1_at--600--3811Chr06:29442835..29442859 (25 bp)
CTGCCACAATGACAATATCCTCTTC
LOC_Os06g48660
Os.49963.1.S1_at--658--631Chr06:29442907..29442931 (25 bp)
ATGCTTCCGTTTTTTGTTATCTCCA
LOC_Os06g48660
Os.49963.1.S1_at--797--6791Chr06:29442922..29442946 (25 bp)
GTTATCTCCAGCATTAGTTCTGTTC
LOC_Os06g48660
Os.49963.1.S1_at--914--6711Chr06:29442938..29442962 (25 bp)
GTTCTGTTCCTTATTTGGCATACTC
LOC_Os06g48660
Os.49963.1.S1_at--701--9911Chr06:29443141..29443165 (25 bp)
TACTGGCTTCAATCTAACGTTGCAA
LOC_Os06g48660
Os.49963.1.S1_at--341--2591Chr06:29443156..29443180 (25 bp)
AACGTTGCAAGAGGCTATCCCCAAG
LOC_Os06g48660
Os.49963.1.S1_at--855--7851Chr06:29443182..29443206 (25 bp)
GGTTTCTATAAGGACTAGCCCATAA
LOC_Os06g48660
Target Sequence 
AGGCCGGAACTTACCAGCATTATGCCTTCCTGTTGCATCGCAAGACATGAAAACAACAGACATAGCAAACAGAGTTGCAA
AACACAGAACCATGGCACCGTTGTTCTTGATAGCCGCCATGAGAGGAGAATCGTTGCTGGTCACTGCCACAATGACAATA
TCCTCTTCATGGGATTTATAGGGACACGACTACAAGAGTATATCATCAAGAATCAATGCTTCCGTTTTTTGTTATCTCCA
GCATTAGTTCTGTTCCTTATTTGGCATACTCAAATTAGGCTGGAGTTAATTAGTATCCATGAGTGACAGATGTTAGCATG
TATAGCAATATTTATTGTAGTGGTGCCAACTGGGGGTATGTGGCATCATGCATGCATGCATTTGAGGAGCTTGTGGTGTC
ATAGTATAGTAGTGACATTTGCATGATTTGTGGAGTCAAGTGAAGTTATTACTGGCTTCAATCTAACGTTGCAAGAGGCT
ATCCCCAAGGGGTTTCTATAAGGACTAGCCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49963.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis