Browse Element(s) Details


Os.5028.1.S1_at

Description gb:AK101967.1
DB_XREF= gi:32987176
TID=Os.5028.1
CNT=11
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5028 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033076I21, full insert sequence.
FL= gb:AK105989.1 gb:AK101967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4887011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g48800OsAffx.3002.1.S1_at10/112+29862249..29863561expressed protein
LOC_Os02g48810Os.6264.1.S1_at11/112+29865499..29869426PHD-finger family protein, expressed
LOC_Os02g48820Os.51793.1.S1_at11/112+29869731..29870836Plastocyanin-like domain containing protein, expressed
LOC_Os02g48830Os.49435.1.S1_at11/112+29871392..2987558865kD microtubule associated protein, putative, expressed
LOC_Os02g48840Os.7957.1.S1_at11/112+29876197..29879372Dual specificity phosphatase, catalytic domain containing protein, expressed
LOC_Os02g48850OsAffx.24791.1.S1_at11/112+29880371..29881234uncharacterized plant-specific domain TIGR01615 family protein
LOC_Os02g48860Os.49623.1.A1_at11/112+29883406..29885465Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870Os.5028.1.S1_at11/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48870OsAffx.23634.2.S1_x_at1/112+29886619..29888444Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48880Os.54083.1.S1_at11/112+29893428..29898211Chloride channel protein CLC-f, putative, expressed
LOC_Os02g48890Os.45161.1.A1_x_at1/112+29902617..29903090hypothetical protein
LOC_Os02g48900Os.7097.2.S1_a_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S2_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48900Os.50522.1.S1_at11/112+29905442..29910445Eukaryotic aspartyl protease family protein, expressed
LOC_Os02g48910Os.24061.1.A1_at11/112+29913385..29914469Ubiquitin-conjugating enzyme family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0003677molecular_functionDNA binding
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5028.1.S1_at--951--4971Chr02:29887177..29887201 (25 bp)
GCATGAAGCAGTACCGGTCGGCGCC
LOC_Os02g48870
Os.5028.1.S1_at--1086--1911Chr02:29887042..29887066 (25 bp)
ACGGGATCATGTACGGCAACTGCCT
LOC_Os02g48870
Os.5028.1.S1_at--192--751Chr02:29887034..29887058 (25 bp)
ATGTACGGCAACTGCCTCGCGTTCG
LOC_Os02g48870
Os.5028.1.S1_at--1010--6131Chr02:29886829..29886853 (25 bp)
GAGGGTAGCAGTAGGTTGCTCTCAT
LOC_Os02g48870
Os.5028.1.S1_at--251--10731Chr02:29886814..29886838 (25 bp)
TTGCTCTCATGTGGTCGTCTACTTG
LOC_Os02g48870
Os.5028.1.S1_at--297--3511Chr02:29886807..29886831 (25 bp)
CATGTGGTCGTCTACTTGTTTGTGG
LOC_Os02g48870
Os.5028.1.S1_at--768--7151Chr02:29886798..29886822 (25 bp)
GTCTACTTGTTTGTGGTTGCGAGGT
LOC_Os02g48870
Os.5028.1.S1_at--846--6091Chr02:29886771..29886795 (25 bp)
GAGTCGTGACGTGTGATGATGACAA
LOC_Os02g48870
Os.5028.1.S1_at--1021--51Chr02:29886731..29886755 (25 bp)
ATTGCAATTGTAATCCAACAACCAA
LOC_Os02g48870
Os.5028.1.S1_at--881--3111Chr02:29886706..29886730 (25 bp)
AATATTATATTAGTCCCTAGCTCTA
LOC_Os02g48870
Os.5028.1.S1_at--605--8031Chr02:29886665..29886689 (25 bp)
GGAGTGAACTTTTCATGATTTTTTA
LOC_Os02g48870
Target Sequence 
GCATGAAGCAGTACCGGTCGGCGCCGGCCAGGAGCATCCTCGACACGTGCTTCGACTTCGCCGGCCAGACCCAGATCTCC
ATACCGACCGTCGCGCTGGTGTTCTCCGGCGGCGCCGCCATCGACCTCGACCCGAACGGGATCATGTACGGCAACTGCCT
CGCGTTCGCCGCCACCGGCGACGACGGGACCACCGGCATCATCGGGAACGTGCAGCAGCGGACGTTCGAGGTCCTGTACG
ACGTCGGCAGCAGCACGCTCGGCTTCCGGTCCGGCGCGTGTTGACCGGGGCGGGCGGCGCGACGCCGGCGCCTGGCGGGC
CGGGCAACACGACACACGTAGAGGCCAAGAGGGTAGCAGTAGGTTGCTCTCATGTGGTCGTCTACTTGTTTGTGGTTGCG
AGGTAAGAGTCGTGACGTGTGATGATGACAAGATATAATGATATATATTGCAATTGTAATCCAACAACCAAAATATTATA
TTAGTCCCTAGCTCTAAAAAAATATTATATTAGGAGTGAACTTTTCATGATTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5028.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis