Browse Element(s) Details


Os.50476.1.S1_at

Description gb:AK121355.1
DB_XREF= gi:37990978
TID=Os.50476.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023122K04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023122K04, full insert sequence.
FL= gb:AK121355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g44870Os.2225.1.S1_at11/114+26339733..26342185Elicitor-responsive protein 3, putative, expressed
LOC_Os04g44880OsAffx.26466.1.S1_at11/114+26343449..26344466expressed protein
LOC_Os04g44890Os.49088.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890OsAffx.4093.1.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44890Os.49088.2.S1_at11/114+26346461..26352602tRNA-dihydrouridine synthase 2, putative, expressed
LOC_Os04g44900Os.18085.1.S1_at11/114+26353622..26355925lectin receptor kinase 7, putative, expressed
LOC_Os04g44910Os.49528.2.S1_at10/114+26357095..26359673lectin protein kinase, putative, expressed
LOC_Os04g44920Os.14142.1.A1_at11/114+26361179..26363859oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44930Os.50476.1.S1_at11/114+26366649..26369854expressed protein
LOC_Os04g44930Os.50624.1.S1_at1/114+26366649..26369854expressed protein
LOC_Os04g44940NANA4+26370513..26370749hypothetical protein
LOC_Os04g44950OsAffx.4094.1.S1_x_at1/114+26371544..26373319oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g44960NANA4+26379638..26385793retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.5.S1_x_at6/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44970Os.31312.2.S1_x_at4/114+26386421..26389601retrotransposon protein, putative, unclassified
LOC_Os04g44980Os.20408.1.S1_at11/114+26392663..26394754oxidoreductase, short chain dehydrogenase/reductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50476.1.S1_at--519--7752Chr09:11605747..11605771 (25 bp)
GGTGTTTATGCTAACTCTTGCCTAG
NONE
Os.50476.1.S1_at--324--10352Chr09:11605810..11605834 (25 bp)
TTTATGTTGTTCAAGGCCTAGCCTT
NONE
Os.50476.1.S1_at--949--10012Chr09:11605859..11605883 (25 bp)
TAGTTCTTAAGATTTCGTTTCACCT
NONE
Os.50476.1.S1_at--323--10052Chr09:11605978..11606002 (25 bp)
TAGATATCCAAGTATTCTCCTACAT
NONE
Os.50476.1.S1_at--622--6872Chr09:11605989..11606013 (25 bp)
GTATTCTCCTACATACTGGATCAAT
NONE
Os.50476.1.S1_at--36--9371Chr04:26369632..26369656 (25 bp)
TCGAGACAATTCCTTGCCACTGAAA
LOC_Os04g44930
Os.50476.1.S1_at--825--4392Chr09:11606144..11606168 (25 bp)
GCCACTGAAACCAATTTTCCTAATA
NONE
Os.50476.1.S1_at--1073--1252Chr09:11606181..11606205 (25 bp)
AGATTTGTTACCCTTCTCATGCCAT
NONE
Os.50476.1.S1_at--126--10572Chr09:11606194..11606218 (25 bp)
TTCTCATGCCATTTCCAAAGATGCA
NONE
Os.50476.1.S1_at--1124--2951Chr04:26369750..26369774 (25 bp)
AATGGCTCTTATGTCCTTATTGTGG
LOC_Os04g44930
Os.50476.1.S1_at--187--9932Chr09:11606295..11606319 (25 bp)
TACGAACAGCGGTACGTGGAAGTTT
NONE
Target Sequence 
GGTGTTTATGCTAACTCTTGCCTAGGAAAACATTGAGCAAGCTAAAAATTTAAATGAACCTGATTTATGTTGTTCAAGGC
CTAGCCTTTTTGTTTGTTTTGAAACACCTTAATAGTTCTTAAGATTTCGTTTCACCTCTCTGCAGCACAAGCAAGGCATT
TCAAGTTGAACACATACATAGATATCCAAGTATTCTCCTACATACTGGATCAATCAGAATTGTTAAGGTTTTGTGGGGAT
CTGGATAATATTTTTCTGAAGCAGTGGTCATAGTATGCAGATAATATTTTTCTGAAGCAGTGATCATATTATGCAGATAA
TATAGATGATCGAGACAATTCCTTGCCACTGAAACCAATTTTCCTAATATACCACTTAACTAGATTTGTTACCCTTCTCA
TGCCATTTCCAAAGATGCATAGTTATCGAACATCAAGTGGATTGTAAAATGGCTCTTATGTCCTTATTGTGGTTTATGTG
TATTATACTTTGTATTACGAACAGCGGTACGTGGAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis