Browse Element(s) Details


Os.50528.1.S1_at

Description gb:AK121627.1
DB_XREF= gi:37991250
TID=Os.50528.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50528 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033049G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049G04, full insert sequence.
FL= gb:AK121627.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0211011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g02050Os.2239.1.S1_at10/113+630546..631143Nonspecific lipid-transfer protein 2, putative, expressed
LOC_Os03g02060OsAffx.12706.1.S1_at11/113+631544..632723hypothetical protein
LOC_Os03g02070Os.22967.1.S1_s_at11/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02070Os.15352.1.S1_at1/113+634813..636130heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g02080Os.24021.1.S1_x_at11/113+636965..639830expressed protein
LOC_Os03g02080Os.49121.1.A1_at11/113+636965..639830expressed protein
LOC_Os03g02090Os.33311.2.S1_at11/113+640631..645102expressed protein
LOC_Os03g02100Os.33311.1.S1_at5/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02100Os.9138.1.S1_at1/113+645214..652178Valyl-tRNA synthetase, putative, expressed
LOC_Os03g02110Os.24954.1.A1_s_at11/113+653032..660226expressed protein
LOC_Os03g02110Os.50528.1.S1_at11/113+653032..660226expressed protein
LOC_Os03g02120NANA3+661125..665059transposon protein, putative, Mariner sub-class
LOC_Os03g02130Os.38395.3.S1_x_at8/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.2.S1_x_at6/113+666915..668224hypothetical protein
LOC_Os03g02130Os.38395.1.S1_at6/113+666915..668224hypothetical protein
LOC_Os03g02140Os.38395.4.S1_x_at6/113+671415..675170transposon protein, putative, Mutator sub-class
LOC_Os03g02150Os.16247.1.S1_s_at11/113+676538..687033Adaptin N terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50528.1.S1_at--197--6571Chr03:659778..659802 (25 bp)
GATTCTGCAATCTCTAACCGACCAT
LOC_Os03g02110
Os.50528.1.S1_at--452--6351Chr03:659980..660004 (25 bp)
GATGCTGTGGCAAACGTTTCTCAAT
LOC_Os03g02110
Os.50528.1.S1_at--160--2391Chr03:659991..660015 (25 bp)
AAACGTTTCTCAATTGTGGTGGCAG
LOC_Os03g02110
Os.50528.1.S1_at--1107--2791Chr03:660025..660049 (25 bp)
AAGATGGTGTGCTTTGCTTTGGTCC
LOC_Os03g02110
Os.50528.1.S1_at--1023--4871Chr03:660040..660064 (25 bp)
GCTTTGGTCCTTCCTGGTCCATTTA
LOC_Os03g02110
Os.50528.1.S1_at--103--8611Chr03:660054..660078 (25 bp)
TGGTCCATTTATTCCGTCAGTCAGG
LOC_Os03g02110
Os.50528.1.S1_at--1035--3431Chr03:660071..660095 (25 bp)
CAGTCAGGCTTTCAGACTTCAGAAG
LOC_Os03g02110
Os.50528.1.S1_at--176--5691Chr03:660102..660126 (25 bp)
GACTTCATTTAAACTGGTGTGCCTC
LOC_Os03g02110
Os.50528.1.S1_at--293--7471Chr03:660118..660142 (25 bp)
GTGTGCCTCTGTCTAGAATCCTATG
LOC_Os03g02110
Os.50528.1.S1_at--1043--5251Chr03:660133..660157 (25 bp)
GAATCCTATGTTGACTGGAGTTATA
LOC_Os03g02110
Os.50528.1.S1_at--804--6071Chr03:660150..660174 (25 bp)
GAGTTATATATCTGTCTTGACCGGT
LOC_Os03g02110
Target Sequence 
GATTCTGCAATCTCTAACCGACCATGAACCCATGATGTTAACTGGTGAAAGATGACCAGATTCAAGAGTGATTCTGTAGA
TTCTTGAACCAGCCATGAGGCCGTGATGTTAACTGGTGATAAGTGATCAGATTCAAAAACATTATTTTTAGTATTGTAAA
GGGCTTTGAGCTTCATCTAAGGTCCCTTTCTTTCTTTTTGCTGATGCTGTGGCAAACGTTTCTCAATTGTGGTGGCAGAT
GCTGCACAAGATGGTGTGCTTTGCTTTGGTCCTTCCTGGTCCATTTATTCCGTCAGTCAGGCTTTCAGACTTCAGAAGTT
CAGAGACTTCATTTAAACTGGTGTGCCTCTGTCTAGAATCCTATGTTGACTGGAGTTATATATCTGTCTTGACCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis