Browse Element(s) Details


Os.50643.2.S1_x_at

Description gb:AK102159.1
DB_XREF= gi:32987368
TID=Os.50643.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033086G01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033086G01, full insert sequence.
FL= gb:AK102159.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4469011/11HSF-type DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein
LOC_Os07g44690Os.50643.2.S1_x_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44690Os.50643.1.S1_a_at11/117+26671944..26675158HSF-type DNA-binding domain containing protein, expressed
LOC_Os07g44700Os.53916.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44700OsAffx.25220.1.S1_at11/117+26675385..26678441expressed protein
LOC_Os07g44710Os.26585.1.A1_at11/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44710OsAffx.28904.1.S1_at5/117+26681343..26687013CDPK-related protein kinase, putative, expressed
LOC_Os07g44720Os.51357.1.S1_at11/117+26693218..26700576retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50643.2.S1_x_at--237--1931Chr07:26674629..26674653 (25 bp)
ACGGCGTCCATGACCAGGGAAGCGA
LOC_Os07g44690
Os.50643.2.S1_x_at--153--7471Chr07:26674655..26674679 (25 bp)
GTGTGAGCGAGCTTTGCAGCCGCCA
LOC_Os07g44690
Os.50643.2.S1_x_at--415--631Chr07:26674679..26674703 (25 bp)
ATGCTTGCTCGATCTCGTGTACATA
LOC_Os07g44690
Os.50643.2.S1_x_at--356--10011Chr07:26674729..26674753 (25 bp)
TAGCTCGATCGATCAGCTCAGCTCA
LOC_Os07g44690
Os.50643.2.S1_x_at--246--631Chr07:26674753..26674777 (25 bp)
ATGCTGCTGCTTGATTTCTTGAGGA
LOC_Os07g44690
Os.50643.2.S1_x_at--520--4771Chr07:26674935..26674959 (25 bp)
GCTGCTACTGCTAGTGCTTAATTGC
LOC_Os07g44690
Os.50643.2.S1_x_at--128--3171Chr07:26674954..26674978 (25 bp)
AATTGCACTTAGGTAGCTCTTGTTT
LOC_Os07g44690
Os.50643.2.S1_x_at--1145--1571Chr07:26674968..26674992 (25 bp)
AGCTCTTGTTTTGTTCTTGCTTATT
LOC_Os07g44690
Os.50643.2.S1_x_at--672--3631Chr07:26674983..26675007 (25 bp)
CTTGCTTATTTTGATCTTGCCATGC
LOC_Os07g44690
Os.50643.2.S1_x_at--262--1351Chr07:26675034..26675058 (25 bp)
AGAGTACTGATCACCTTTCATGCTG
LOC_Os07g44690
Os.50643.2.S1_x_at--538--5331Chr07:26675128..26675152 (25 bp)
GAAGTCCAAGGCATCTAAGTTTTTG
LOC_Os07g44690
Target Sequence 
ACGGCGTCCATGACCAGGGAAGCGAGGTGTGAGCGAGCTTTGCAGCCGCCATGCTTGCTCGATCTCGTGTACATATAGAG
AAGAGAGGATGATGATGAGCTAGCTCGATCGATCAGCTCAGCTCATGCTGCTGCTTGATTTCTTGAGGAGGATGACGACG
ACGACGAAGATTGATTTGCGCAAGGGTGCAGGTGTTAATTAGTTTGTTAATTAGTCTTTGAGATGAGATGACAAGAGTTG
ATTAGCGTTAAGGTAGGAGTAGCTAGCTAGGAGGTAATTAGGATCAATCAAATCAATTAGTAGCTAGCTGCTACTGCTAG
TGCTTAATTGCACTTAGGTAGCTCTTGTTTTGTTCTTGCTTATTTTGATCTTGCCATGCATCATGCATGCCATGCATCAT
GTGAGAGAGTACTGATCACCTTTCATGCTGGTGAAGAGTGATGATCAGACGAGGAACTAGCTTAATTAGCTAGCTAAGTG
GATGTTAAATGGTACTAATGAAGTCCAAGGCATCTAAGTTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50643.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis