Browse Element(s) Details


Os.5082.1.S1_a_at

Description gb:AK101187.1
DB_XREF= gi:32986396
TID=Os.5082.1
CNT=64
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.5082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phospholipase (OSJNBa0010E04.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033030C17, full insert sequence.
FL= gb:AK067741.1 gb:AK101187.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6113011/11phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein
LOC_Os03g61150Os.11897.1.S1_at11/113+34672407..34673699expressed protein
LOC_Os03g61160Os.28200.1.S1_x_at11/113+34677942..34679589expressed protein
LOC_Os03g61170OsAffx.22644.1.S1_at11/113+34682559..34684274retrotransposon protein, putative, unclassified
LOC_Os03g61180OsAffx.5954.1.S1_x_at7/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61180OsAffx.5954.3.S1_x_at4/113+34685029..34688177retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g61190OsAffx.22645.1.S1_at11/113+34689743..34693375retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009395biological_processphospholipid catabolism
GO:0005886cellular_componentplasma membrane
GO:0004629molecular_functionphospholipase C activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5082.1.S1_a_at--320--9892Chr04:9051812..9051836 (25 bp)
TACTCAACACCTACCCAGATATTGG
NONE
Os.5082.1.S1_a_at--569--3012Chr04:9051931..9051955 (25 bp)
AATGAATCTGCTTTGGTCACCATGA
NONE
Os.5082.1.S1_a_at--590--3351Chr03:34665764..34665788 (25 bp)
CACCGTCCTCTGATTTATCATCTGA
LOC_Os03g61130
Os.5082.1.S1_a_at--104--7931Chr03:34665797..34665821 (25 bp)
GGATTGTTCTCAGATTTATCCACAA
LOC_Os03g61130
Os.5082.1.S1_a_at--907--10591Chr03:34665822..34665846 (25 bp)
TTCTGCATCATGATTTGCACCGCGT
LOC_Os03g61130
Os.5082.1.S1_a_at--107--10751Chr03:34665836..34665860 (25 bp)
TTGCACCGCGTCAGCTTTTGGTTGA
LOC_Os03g61130
Os.5082.1.S1_a_at--1069--6291Chr03:34665859..34665883 (25 bp)
GATGAGAACTCGTACAATGTGCTAA
LOC_Os03g61130
Os.5082.1.S1_a_at--259--2711Chr03:34665987..34666011 (25 bp)
AAGCTTTTACTTCAGCTGTCCTCTG
LOC_Os03g61130
Os.5082.1.S1_a_at--342--7051Chr03:34666081..34666105 (25 bp)
GTAAACCATCGATATTCAGCTCTGT
LOC_Os03g61130
Os.5082.1.S1_a_at--433--10531Chr03:34666095..34666119 (25 bp)
TTCAGCTCTGTACCTGCTTATTCAG
LOC_Os03g61130
Os.5082.1.S1_a_at--865--5031Chr03:34666119..34666143 (25 bp)
GCAGTTGAACTGCACTTCTGATGAA
LOC_Os03g61130
Target Sequence 
TACTCAACACCTACCCAGATATTGGCAGGACTATGACTGTGGGTGAAGCAAACCGCTATGCAGAGGATGCTGTTGCTAGA
TTTTTGGAAGCTGGCAGNATTGCTCTAAGAGCTGGTGCAAATGAATCTGCTTTGGTCACCATGAGGCCTGCACTCACCAG
CAGAGCCTCACCGTCCTCTGATTTATCATCTGAACTCTGATGGATTGTTCTCAGATTTATCCACAATTCTGCATCATGAT
TTGCACCGCGTCAGCTTTTGGTTGATGAGAACTCGTACAATGTGCTAAGAAAACATAGGTAGGTTGGTGTACGGCAAAGT
GTGCTAGTATTATGTAATTGATAGATCTTAAACATGGCTTTGTACATAGACATCATGATACTTGATATCTCAAGCTTTTA
CTTCAGCTGTCCTCTGATAACGCTGAGATATCAGCTCAGAAGTATCTGATAAGATCCTACTCTGGATAAGCTGGAGAGGG
AATTTGTAAACCATCGATATTCAGCTCTGTACCTGCTTATTCAGCAGTTGAACTGCACTTCTGATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5082.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis