Browse Element(s) Details


Os.5086.1.S1_at

Description gb:AY332471.1
DB_XREF= gi:33242906
GEN=PT1
TID=Os.5086.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5086 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) phosphate transporter (PT1) mRNA, complete cds.
PROD=phosphate transporter
FL= gb:AK108907.1 gb:AF536959.1 gb:AY332471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0564010/11phosphate:H+ symporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05580NANA3+2772655..2773335hypothetical protein
LOC_Os03g05590Os.38983.1.S1_at11/113+2779401..2780011AP2 domain containing protein, expressed
LOC_Os03g05600OsAffx.24984.1.S1_at11/113+2781982..2782394hypothetical protein
LOC_Os03g05610Os.54757.1.S1_at11/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05610Os.57546.1.S1_x_at1/113+2783252..2785052phosphate transporter HvPT5, putative, expressed
LOC_Os03g05620Os.12092.2.S1_a_at11/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05620Os.57546.1.S1_x_at4/113+2786689..2788650phosphate:H+ symporter family protein, expressed
LOC_Os03g05630Os.54405.1.S1_at2/113+2790889..2793111expressed protein
LOC_Os03g05640Os.5086.1.S1_at10/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.57546.1.S1_x_at2/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05640Os.46784.1.S1_x_at1/113+2794550..2796478phosphate:H+ symporter family protein, expressed
LOC_Os03g05650Os.57503.1.A1_at7/113+2798108..2799229expressed protein
LOC_Os03g05660Os.49567.1.S1_at3/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05660OsAffx.25937.1.S1_at1/113+2802418..2807057Appr-1-p processing enzyme family protein, expressed
LOC_Os03g05670Os.47130.4.A1_x_at2/113+2810854..2811177retrotransposon protein, putative, unclassified
LOC_Os03g05680Os.57105.1.S1_x_at11/113+2812244..2816379jmjC domain containing protein, expressed
LOC_Os03g05690Os.57046.1.S1_s_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05690Os.9018.1.S1_at11/113+2817883..2820800Zinc finger, C2H2 type family protein, expressed
LOC_Os03g05700Os.56054.1.S1_at11/113+2820901..2821502expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006817biological_processphosphate transport
GO:0016020cellular_componentmembrane
GO:0005315molecular_functioninorganic phosphate transporter activity
GO:0005351molecular_functionsugar porter activity
GO:0015114molecular_functionphosphate transporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5086.1.S1_at--755--8291Chr03:2795200..2795224 (25 bp)
GGCTTCGTCGTGCTCTACGCACTCA
LOC_Os03g05640
Os.5086.1.S1_at--314--8071Chr03:2795018..2795042 (25 bp)
GGACCAGCACAATCCCGACGCGGGA
LOC_Os03g05640
Os.5086.1.S1_at--152--5811Chr03:2795002..2795026 (25 bp)
GACGCGGGATACTCCCGCGGCATCG
LOC_Os03g05640
Os.5086.1.S1_at--933--5771Chr03:2794858..2794882 (25 bp)
GACGAGACCGCCCAAGAAGCGATCG
LOC_Os03g05640
Os.5086.1.S1_at--529--5411Chr03:2794845..2794867 (23 bp)
GAAGCGATCGCCCAAGCGTGATGAT
LOC_Os03g05640
Os.5086.1.S1_at--894--9331NONE
TCGCCCAAGCGTGATGATGTCATAA
NONE
Os.5086.1.S1_at--355--6271Chr03:2794824..2794848 (25 bp)
GATGTCATAAACATGCCGTCTCGAC
LOC_Os03g05640
Os.5086.1.S1_at--257--2391Chr03:2794816..2794840 (25 bp)
AAACATGCCGTCTCGACGTGAGTGA
LOC_Os03g05640
Os.5086.1.S1_at--866--9171Chr03:2794811..2794835 (25 bp)
TGCCGTCTCGACGTGAGTGACTGAA
LOC_Os03g05640
Os.5086.1.S1_at--445--7171Chr03:2794807..2794831 (25 bp)
GTCTCGACGTGAGTGACTGAAAAAA
LOC_Os03g05640
Os.5086.1.S1_at--607--2991Chr03:2794782..2794806 (25 bp)
AATGTATGCTTTATTACTCTATTGG
LOC_Os03g05640
Target Sequence 
GGCTTCGTCGTGCTCTACGCACTCACCTTCTTCTTCGCNAACTTNGGNCCCAANNNCACCACCTTCATCGTGCCGGCTGA
GATCTTCCCGGCGAGGCTCCGGTCGACGTGCCACGGCATCTCCGCCGCGTCCGGCAAGGCCGGCGCGATCATCGGCGCGT
TCGGGTTCCTGTACGCTGCGCAGGACCAGCACAATCCCGACGCGGGATACTCCCGCGGCATCGGCATCCGGAACGCGCTC
TTCGTGCTCGCCGGCACAAANCTTCCTCGGTATGCTCATGACGCTGCTGGTGCCGGAGTCCAAGGGCTTGTCGCTGGAGG
AGATGTCCAAGGACAACGTCGTCGACGAGACCGCCCAAGAAGCGATCGCCCAAGCGTGATGATGTCATAAACATGCCGTC
TCGACGTGAGTGACTGAAAAAAAAAATGTATGCTTTATTACTCTATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5086.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis