Browse Element(s) Details

Os.51172.1.S1_x_at

Description

gb:AK061280.1
DB_XREF= gi:32971298
TID=Os.51172.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51172 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-212-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-212-F06, full insert sequence.
FL= gb:AK061280.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g51050	11/11	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	2/11	Basic endochitinase 1 precursor, putative, expressed
LOC_Os03g30470	1/11	Basic endochitinase 2 precursor, putative, expressed
LOC_Os04g41680	1/11	Endochitinase A precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g51000	OsAffx.28204.1.S1_at	11/11	6	+	30865015..30866012	expressed protein
LOC_Os06g51010	OsAffx.16014.1.S1_at	11/11	6	+	30868025..30868840	expressed protein
LOC_Os06g51029	Os.22474.1.S1_at	11/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.43567.1.S1_x_at	3/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.38172.1.S1_x_at	2/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51029	Os.53217.1.S1_x_at	1/11	6	+	30869319..30876990	Cell division protein ftsH homolog 1, chloroplast precursor, putative, expressed
LOC_Os06g51050	Os.51172.1.S1_x_at	11/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51050	Os.2692.1.S1_x_at	8/11	6	+	30886217..30887385	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.22000.1.S1_at	11/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.51172.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51060	Os.2692.1.S1_x_at	2/11	6	+	30889767..30891053	Basic endochitinase 1 precursor, putative, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_x_at	9/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51070	OsAffx.16015.1.S1_at	8/11	6	+	30892524..30893525	No apical meristem protein, expressed
LOC_Os06g51084	Os.22169.2.S2_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S1_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.2.S2_x_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S1_a_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.5160.1.S1_s_at	11/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.1.S2_at	9/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	Os.22169.4.S1_x_at	7/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51084	OsAffx.19654.1.S1_at	1/11	6	+	30896380..30904805	1,4-alpha-glucan branching enzyme, chloroplast precursor, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S2_x_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.2.S1_at	11/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.49835.1.S1_x_at	10/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed
LOC_Os06g51100	Os.26963.1.A1_at	1/11	6	+	30906002..30912488	MAP kinase-activating protein C22orf5 homolog, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009626	biological_process	hypersensitive response
GO:0009871	biological_process	jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0050832	biological_process	defense response to fungi
GO:0004568	molecular_function	chitinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.51172.1.S1_x_at--114--343	1	Chr06:30886870..30886894 (25 bp)	CAGATCACCTACAACTACAACTACG	LOC_Os06g51050
Os.51172.1.S1_x_at--344--399	3	Chr06:30890571..30890595 (25 bp)	CGTCTCCTTCAAGACGGCGTTCTGG	LOC_Os06g51060
Os.51172.1.S1_x_at--292--947	3	Chr06:30890591..30890615 (25 bp)	TCTGGTTCTGGATGACGCCGCAGTC	LOC_Os06g51060
Os.51172.1.S1_x_at--650--463	1	Chr06:30887078..30887102 (25 bp)	GCGTTCCGGGCTACGGCGAGATCAC	LOC_Os06g51050
Os.51172.1.S1_x_at--87--199	1	Chr06:30887183..30887207 (25 bp)	ACTGCGACATGCTGGGCGTCAGCTA	LOC_Os06g51050
Os.51172.1.S1_x_at--17--757	1	Chr06:30887196..30887220 (25 bp)	GGGCGTCAGCTATGGCGATAACCTG	LOC_Os06g51050
Os.51172.1.S1_x_at--90--87	1	Chr06:30887207..30887231 (25 bp)	ATGGCGATAACCTGGATTGCTACAA	LOC_Os06g51050
Os.51172.1.S1_x_at--412--793	1	Chr06:30887220..30887244 (25 bp)	GGATTGCTACAACCAGAGGCCCTAC	LOC_Os06g51050
Os.51172.1.S1_x_at--1136--179	1	Chr06:30887243..30887267 (25 bp)	ACCCGCCTTCCTAGTTGATATTTGA	LOC_Os06g51050
Os.51172.1.S1_x_at--227--651	1	Chr06:30887259..30887283 (25 bp)	GATATTTGATCCGAGCAGACGAATA	LOC_Os06g51050
Os.51172.1.S1_x_at--321--553	1	Chr06:30887316..30887340 (25 bp)	GAAAAACATATACTACCTCTGAATT	LOC_Os06g51050

Target Sequence

CAGATCACCTACAACTACAACTACGGCCCGGCGGGGCAGGCCATCGGCTCCGACCTGCTCAACAACCCGGACCTGGTGGC
GTCGGACGCCACCGTCTCCTTCAAGACGGCGTTCTGGTTCTGGATGACGCCGCAGTCGCCCAAGCCGTCGTGCCACGCGG
TGATCACCGGCCAGTGGACGCCGTCCGCCGACGACCAGGCGGCGGGGCGCGTTCCGGGCTACGGCGAGATCACCAACATC
ATCAACGGCGGTGTGGAGTGCGGGCACGGCGCGGACGACAAGGTGGCCGACCGGATCGGGTTCTACAAGCGCTACTGCGA
CATGCTGGGCGTCAGCTATGGCGATAACCTGGATTGCTACAACCAGAGGCCCTACCCGCCTTCCTAGTTGATATTTGATC
CGAGCAGACGAATAAAATACAATGCACACGAGATTGTGAGACTCGTGAAAAACATATACTACCTCTGAATT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis