Browse Element(s) Details


Os.51185.2.S1_at

Description gb:AK061413.1
DB_XREF= gi:32971431
TID=Os.51185.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001F22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-306-C12, full insert sequence.
FL= gb:AK061413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4655011/11NB-ARC domain containing protein, expressed
LOC_Os06g302001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g286701/11hypothetical protein
LOC_Os01g288821/11hypothetical protein
LOC_Os07g151101/11retrotransposon protein, putative, unclassified
LOC_Os12g094401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g46500OsAffx.25578.1.S1_at11/113+26263008..26264615F-box domain containing protein
LOC_Os03g46510Os.24829.1.A1_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46510Os.24829.2.S1_x_at11/113+26266239..26268653F-box domain containing protein, expressed
LOC_Os03g46530OsAffx.25579.3.S1_at11/113+26273924..26276706F-box domain containing protein
LOC_Os03g46530Os.24829.2.S1_x_at2/113+26273924..26276706F-box domain containing protein
LOC_Os03g46540OsAffx.3533.1.S1_at11/113+26278837..26282292hypothetical protein
LOC_Os03g46550Os.51185.2.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550OsAffx.25580.1.S1_x_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46550Os.51185.2.S1_at11/113+26286909..26291150NB-ARC domain containing protein, expressed
LOC_Os03g46560OsAffx.4205.2.A1_at2/113+26292666..26295522membrane associated salt-inducible protein, putative
LOC_Os03g46570OsAffx.25581.1.S1_at11/113+26312309..26313412expressed protein
LOC_Os03g46570Os.49537.1.S1_x_at5/113+26312309..26313412expressed protein
LOC_Os03g46570Os.20627.3.S1_x_at1/113+26312309..26313412expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51185.2.S1_at--185--20564Chr12:24358214..24358233 (20 bp)
ACTTATAGATGGATACTATGCGTAT
NONE
Os.51185.2.S1_at--140--4652Chr12:8142279..8142298 (20 bp)
GCGTATGTAATATTGTTGTGTGCTT
NONE
Os.51185.2.S1_at--589--6632Chr03:26290980..26291004 (25 bp)
GTTGTGTGCTTATATTGAGTCAAGT
LOC_Os03g46550
Os.51185.2.S1_at--181--1251Chr03:26291002..26291026 (25 bp)
AGTTGGAGAGAACTTATGCTCGGAT
LOC_Os03g46550
Os.51185.2.S1_at--64--631Chr03:26291017..26291041 (25 bp)
ATGCTCGGATATATTTTCTTGGTTG
LOC_Os03g46550
Os.51185.2.S1_at--318--10531Chr03:26291032..26291056 (25 bp)
TTCTTGGTTGATTCACGTGTCGGTG
LOC_Os03g46550
Os.51185.2.S1_at--339--1911Chr03:26291046..26291070 (25 bp)
ACGTGTCGGTGAGTCATGATACCTT
LOC_Os03g46550
Os.51185.2.S1_at--584--7191Chr03:26291050..26291074 (25 bp)
GTCGGTGAGTCATGATACCTTGGAA
LOC_Os03g46550
Os.51185.2.S1_at--1150--6471Chr03:26291063..26291087 (25 bp)
GATACCTTGGAAGAGTGTTGCCGAT
LOC_Os03g46550
Os.51185.2.S1_at--636--8512Chr08:18480081..18480101 (21 bp)
TGGAAGAGTGTTGCCGATAATGGAT
NONE
Os.51185.2.S1_at--1099--4252Chr03:26291123..26291147 (25 bp)
CCGGACGATCAAGATATCATACGAG
LOC_Os03g46550
Target Sequence 
ACTTATAGATGGATACTATGCGTATGTAATATTGTTGTGTGCTTATATTGAGTCAAGTTGGAGAGAACTTATGCTCGGAT
ATATTTTCTTGGTTGATTCACGTGTCGGTGAGTCATGATACCTTGGAAGAGTGTTGCCGATAATGGATCGGGAGTCAATT
TGGGAGAAGATGATGTCCGGACGATCAAGATATCATACGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51185.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis