Browse Element(s) Details


Os.51370.1.S1_at

Description gb:AK062663.1
DB_XREF= gi:32972681
TID=Os.51370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F07, full insert sequence.
FL= gb:AK062663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2250011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22440OsAffx.22699.1.S1_x_at1/1112+12667776..12669335retrotransposon protein, putative, unclassified
LOC_Os12g22450OsAffx.19776.1.S1_at10/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8469.1.S1_x_at2/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8847.1.S1_x_at1/1112+12670248..12672162hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_x_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22470Os.27639.1.S1_x_at3/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.28705.1.S1_at2/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.1746.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470Os.29043.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22480NANA12+12682522..12683448transposon protein, putative, unclassified
LOC_Os12g22490Os.10626.4.A1_s_at11/1112+12692005..12692436hypothetical protein
LOC_Os12g22490Os.40531.1.A1_x_at3/1112+12692005..12692436hypothetical protein
LOC_Os12g22500Os.51370.1.S1_x_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.51370.1.S1_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.52249.2.S1_x_at1/1112+12694169..12695021expressed protein
LOC_Os12g22510OsAffx.3812.1.S1_x_at4/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.22699.1.S1_x_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.3812.1.S1_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.18275.1.S1_x_at1/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22520NANA12+12709660..12712568hypothetical protein
LOC_Os12g22530Os.39852.1.S1_at2/1112+12715272..12715793hypothetical protein
LOC_Os12g22540Os.48015.1.A1_x_at2/1112+12719880..12720326retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51370.1.S1_at--104--4811Chr12:12694476..12694500 (25 bp)
GCTCGTTGCCATGTCGCTTCGGTAT
LOC_Os12g22500
Os.51370.1.S1_at--734--9391Chr12:12694474..12694498 (25 bp)
TCGTTGCCATGTCGCTTCGGTATGC
LOC_Os12g22500
Os.51370.1.S1_at--393--6691Chr12:12694472..12694496 (25 bp)
GTTGCCATGTCGCTTCGGTATGCGC
LOC_Os12g22500
Os.51370.1.S1_at--385--4431Chr12:12694469..12694493 (25 bp)
GCCATGTCGCTTCGGTATGCGCCGC
LOC_Os12g22500
Os.51370.1.S1_at--310--5391Chr12:12694425..12694449 (25 bp)
GAAGCTCACTGGCTCGATAGGGAAA
LOC_Os12g22500
Os.51370.1.S1_at--1023--1571Chr12:12694423..12694447 (25 bp)
AGCTCACTGGCTCGATAGGGAAAGC
LOC_Os12g22500
Os.51370.1.S1_at--159--9651Chr12:12694420..12694444 (25 bp)
TCACTGGCTCGATAGGGAAAGCGCG
LOC_Os12g22500
Os.51370.1.S1_at--739--10231Chr12:12694197..12694221 (25 bp)
TATTGTTTAAGATACATGCACTGTG
LOC_Os12g22500
Os.51370.1.S1_at--230--6831Chr12:12694193..12694217 (25 bp)
GTTTAAGATACATGCACTGTGAAGT
LOC_Os12g22500
Os.51370.1.S1_at--747--2091Chr12:12694184..12694208 (25 bp)
ACATGCACTGTGAAGTATAGTTCTT
LOC_Os12g22500
Os.51370.1.S1_at--789--8631Chr12:12694176..12694200 (25 bp)
TGTGAAGTATAGTTCTTTACCCGGT
LOC_Os12g22500
Target Sequence 
GCTCGTTGCCATGTCGCTTCGGTATGCGCCGCCGCCACTGTCCTCGTCGGAGAAGCTCACTGGCTCGATAGGGAAAGCGC
GGAGAAGGAGAGGAGCTCGAGGTTGAGGCCGCGTCCGAGCTCGCCGGCGTCTGTGCCTTCTTGCCCGCCGTCCTCGCCCC
TTGCCGCTTGCCGTCCTGGTCAGTGGCATGCGAGGAGAATGGATAGAGATAGAGGGAGAGATGAATGTGAAAAGAGAGAT
GGTGGGACCTACTAACATGGGTGGGACCCACAAAGAGAGTATTGTTTAAGATACATGCACTGTGAAGTATAGTTCTTTAC
CCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51370.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis