Browse Element(s) Details


Os.51370.1.S1_x_at

Description gb:AK062663.1
DB_XREF= gi:32972681
TID=Os.51370.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51370 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F07, full insert sequence.
FL= gb:AK062663.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2250011/11expressed protein
LOC_Os02g018302/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g22440OsAffx.22699.1.S1_x_at1/1112+12667776..12669335retrotransposon protein, putative, unclassified
LOC_Os12g22450OsAffx.19776.1.S1_at10/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8469.1.S1_x_at2/1112+12670248..12672162hypothetical protein
LOC_Os12g22450OsAffx.8847.1.S1_x_at1/1112+12670248..12672162hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_x_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22460OsAffx.7657.1.S1_at11/1112+12674119..12674397hypothetical protein
LOC_Os12g22470Os.27639.1.S1_x_at3/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.28705.1.S1_at2/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470OsAffx.1746.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22470Os.29043.1.S1_at1/1112+12677469..12681434transposon protein, putative, unclassified
LOC_Os12g22480NANA12+12682522..12683448transposon protein, putative, unclassified
LOC_Os12g22490Os.10626.4.A1_s_at11/1112+12692005..12692436hypothetical protein
LOC_Os12g22490Os.40531.1.A1_x_at3/1112+12692005..12692436hypothetical protein
LOC_Os12g22500Os.51370.1.S1_x_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.51370.1.S1_at11/1112+12694169..12695021expressed protein
LOC_Os12g22500Os.52249.2.S1_x_at1/1112+12694169..12695021expressed protein
LOC_Os12g22510OsAffx.3812.1.S1_x_at4/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.22699.1.S1_x_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.3812.1.S1_at2/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22510OsAffx.18275.1.S1_x_at1/1112+12704724..12708662retrotransposon protein, putative, unclassified
LOC_Os12g22520NANA12+12709660..12712568hypothetical protein
LOC_Os12g22530Os.39852.1.S1_at2/1112+12715272..12715793hypothetical protein
LOC_Os12g22540Os.48015.1.A1_x_at2/1112+12719880..12720326retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51370.1.S1_x_at--426--1071Chr12:12694540..12694564 (25 bp)
AGGGAGAGCCTCATCGTCGTCCACA
LOC_Os12g22500
Os.51370.1.S1_x_at--103--4811Chr12:12694476..12694500 (25 bp)
GCTCGTTGCCATGTCGCTTCGGTAT
LOC_Os12g22500
Os.51370.1.S1_x_at--1110--9191Chr12:12694470..12694494 (25 bp)
TGCCATGTCGCTTCGGTATGCGCCG
LOC_Os12g22500
Os.51370.1.S1_x_at--605--7192Chr02:31422745..31422768 (24 bp)
GTCGGAGAAGCTCACTGGCTCGATA
NONE
Os.51370.1.S1_x_at--311--5391Chr12:12694425..12694449 (25 bp)
GAAGCTCACTGGCTCGATAGGGAAA
LOC_Os12g22500
Os.51370.1.S1_x_at--158--9651Chr12:12694420..12694444 (25 bp)
TCACTGGCTCGATAGGGAAAGCGCG
LOC_Os12g22500
Os.51370.1.S1_x_at--1100--10694Chr08:20419862..20419881 (20 bp)
TTGCCGCTTGCCGTCCTGGTCAGTG
NONE
Os.51370.1.S1_x_at--432--10693Chr12:12694309..12694333 (25 bp)
TTGCCGTCCTGGTCAGTGGCATGCG
LOC_Os12g22500
Os.51370.1.S1_x_at--438--51Chr12:12694196..12694220 (25 bp)
ATTGTTTAAGATACATGCACTGTGA
LOC_Os12g22500
Os.51370.1.S1_x_at--748--2091Chr12:12694184..12694208 (25 bp)
ACATGCACTGTGAAGTATAGTTCTT
LOC_Os12g22500
Os.51370.1.S1_x_at--790--8631Chr12:12694176..12694200 (25 bp)
TGTGAAGTATAGTTCTTTACCCGGT
LOC_Os12g22500
Target Sequence 
AGGGAGAGCCTCATCGTCGTCCACATGCTCCGCTCCGCGTTGCCGACCTCGGTGTCACCGGGGAGCTCGTTGCCATGTCG
CTTCGGTATGCGCCGCCGCCACTGTCCTCGTCGGAGAAGCTCACTGGCTCGATAGGGAAAGCGCGGAGAAGGAGAGGAGC
TCGAGGTTGAGGCCGCGTCCGAGCTCGCCGGCGTCTGTGCCTTCTTGCCCGCCGTCCTCGCCCCTTGCCGCTTGCCGTCC
TGGTCAGTGGCATGCGAGGAGAATGGATAGAGATAGAGGGAGAGATGAATGTGAAAAGAGAGATGGTGGGACCTACTAAC
ATGGGTGGGACCCACAAAGAGAGTATTGTTTAAGATACATGCACTGTGAAGTATAGTTCTTTACCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51370.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis