Browse Element(s) Details


Os.51398.1.S1_x_at

Description gb:AK062707.1
DB_XREF= gi:32972725
TID=Os.51398.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51398 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B10, full insert sequence.
FL= gb:AK062707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1399011/11ATPase, AAA family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g13960OsAffx.30226.2.S1_s_at5/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.442.1.S1_x_at3/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.24587.1.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.2.S1_x_at2/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.5.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.30226.4.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13960OsAffx.19052.1.S1_at1/1111+7721569..7725619retrotransposon protein, putative, unclassified
LOC_Os11g13970OsAffx.7105.1.S1_x_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.7105.1.S1_at11/1111+7741441..7742877Transferase family protein
LOC_Os11g13970OsAffx.28276.1.S1_x_at2/1111+7741441..7742877Transferase family protein
LOC_Os11g13980Os.55330.1.S1_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13980Os.55330.1.S1_x_at11/1111+7745843..7746586Hsp20/alpha crystallin family protein, expressed
LOC_Os11g13990OsAffx.30967.1.S1_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g13990Os.51398.1.S1_x_at11/1111+7748786..7755776ATPase, AAA family protein
LOC_Os11g14000Os.54533.1.S1_at10/1111+7766615..7767947ANTH domain containing protein, expressed
LOC_Os11g14010Os.17018.1.S1_at11/1111+7772111..7779644PHD finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010026biological_processtrichome differentiation (sensu Magnoliophyta)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51398.1.S1_x_at--152--3891Chr11:7750031..7750055 (25 bp)
CTGTGCTTCAGCTGCTAGTGGAGGT
LOC_Os11g13990
Os.51398.1.S1_x_at--978--1011Chr11:7750010..7750034 (25 bp)
AGGTTTGCAGTCATGCACCACTGAA
LOC_Os11g13990
Os.51398.1.S1_x_at--775--5531Chr11:7749932..7749956 (25 bp)
GAAAGCCGTGACTGTTGAGGAGCAA
LOC_Os11g13990
Os.51398.1.S1_x_at--1116--2311Chr11:7749900..7749924 (25 bp)
AAAGTGCATGGCTTCAGGCTGTTGA
LOC_Os11g13990
Os.51398.1.S1_x_at--188--2411Chr11:7749874..7749898 (25 bp)
AAACATGCACCTGGGATTTTGAATC
LOC_Os11g13990
Os.51398.1.S1_x_at--888--5451Chr11:7749805..7749829 (25 bp)
GAACAGTACCACAGGATGCCCGAAA
LOC_Os11g13990
Os.51398.1.S1_x_at--634--7951Chr11:7749792..7749816 (25 bp)
GGATGCCCGAAACGGACACTGTTTT
LOC_Os11g13990
Os.51398.1.S1_x_at--307--6811Chr11:7749772..7749796 (25 bp)
GTTTTTCCCTCAAGGCAAGTCGACA
LOC_Os11g13990
Os.51398.1.S1_x_at--65--8571Chr11:7749674..7749698 (25 bp)
TGGATATGCCATTTCACCAAGCCTC
LOC_Os11g13990
Os.51398.1.S1_x_at--104--1111Chr11:7749179..7749481 (25 bp)
AGTGTGGTCTCTGAGCCCGGAGCAC
LOC_Os11g13990
Os.51398.1.S1_x_at--548--8071Chr11:7749161..7749185 (25 bp)
GGAGCACCTGGCTGTCATGGTCTGT
LOC_Os11g13990
Target Sequence 
CTGTGCTTCAGCTGCTAGTGGAGGTTTGCAGTCATGCACCACTGAAGGGAACACAGGAATGCATAGAACTAGAGGGAAAG
AAGTCTCTGTTGAACAAGCGAAAGCCGTGACTGTTGAGGAGCAAAGGTTAGAAAGTGCATGGCTTCAGGCTGTTGAAAAA
CATGCACCTGGGATTTTGAATCAAATGAGACCTGAGAGAAATCAAGTTGTGCCACGAATTAGTGGTGAACAGTACCACAG
GATGCCCGAAACGGACACTGTTTTTCCCTCAAGGCAAGTCGACAAGGAACTGAGCAATGGATTAAAATCCTTAAATATTG
GCAGCCATGGTCTCCGCCAAAATGGACAAATGGAAAATGGATATGCCATTTCACCAAGCCTCTTGCATAGCAATAACCAC
TTGGCAAACTGTGACAATGAGAGTGTGGTCTCTGAGCCCGGAGCACCTGGCTGTCATGGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51398.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis