Browse Element(s) Details


Os.51512.1.S1_at

Description gb:AK062988.1
DB_XREF= gi:32973006
TID=Os.51512.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-F11, full insert sequence.
FL= gb:AK062988.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5818011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58180Os.51512.1.S1_at11/112+35603187..35604999expressed protein
LOC_Os02g58189NANA2+35610995..35611354NA
LOC_Os02g58200Os.23006.1.S1_at11/112+35615876..35616367expressed protein
LOC_Os02g58210Os.18195.1.S1_at11/112+35618268..35624929jmjC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51512.1.S1_at--1025--1111Chr02:35603283..35603307 (25 bp)
AGTGAGACGACTTACATGGCCTTCT
LOC_Os02g58180
Os.51512.1.S1_at--751--3491Chr02:35603297..35603321 (25 bp)
CATGGCCTTCTTTTGGGTCAGGTAA
LOC_Os02g58180
Os.51512.1.S1_at--549--191Chr02:35603335..35603359 (25 bp)
ATTTCTTGGCACAGCATTTGCAGCT
LOC_Os02g58180
Os.51512.1.S1_at--709--4731Chr02:35603357..35603381 (25 bp)
GCTGTACATGTGATTGACGCCAACT
LOC_Os02g58180
Os.51512.1.S1_at--902--4391Chr02:35603375..35603399 (25 bp)
GCCAACTATGACTCGTGCAGCAGAC
LOC_Os02g58180
Os.51512.1.S1_at--847--3591Chr02:35603441..35603465 (25 bp)
CTTGGAGCAGCATAGCACACCGATG
LOC_Os02g58180
Os.51512.1.S1_at--367--6031Chr02:35603501..35603525 (25 bp)
GAGATGTCCACACTGACTGACTAGA
LOC_Os02g58180
Os.51512.1.S1_at--146--6711Chr02:35603547..35603571 (25 bp)
GTTCCCCTGATTACTGCAAAGCAAG
LOC_Os02g58180
Os.51512.1.S1_at--649--9831Chr02:35603711..35603735 (25 bp)
TAAAGCTCCTATGTCAACCCAACTG
LOC_Os02g58180
Os.51512.1.S1_at--893--1491Chr02:35603813..35603837 (25 bp)
AGCACTGTAATTGTTGCTCCTGCTC
LOC_Os02g58180
Os.51512.1.S1_at--892--9091Chr02:35603833..35603857 (25 bp)
TGCTCCATCATCAATTCGGTCGAAC
LOC_Os02g58180
Target Sequence 
AGTGAGACGACTTACATGGCCTTCTTTTGGGTCAGGTAAATTTCTTTTGTTCATTTCTTGGCACAGCATTTGCAGCTGTA
CATGTGATTGACGCCAACTATGACTCGTGCAGCAGACAAGCAAGCAAGCAAGCACGCCTTCTTTTCTTTGTCTTGTTTCT
TGGAGCAGCATAGCACACCGATGCAACGAAATGAGGAAGGAAATCACAAATGAATTTAGAGATGTCCACACTGACTGACT
AGAAATCACACGCACGAGAGAGCAGTTCCCCTGATTACTGCAAAGCAAGCAAGGCAAGGCAAGAAAAGGAAGAAGAGTTT
GTTTTTCATCTTGTTGATGGTGGTGGTGGAGTCACGGTGCACAGCAGGGGATGGATGGATGGATGGATGGATGGATGANA
GAAGCANAGACCTAACCTAATCAGCGGCTAAAGCTCCTATGTCAACCCAACTGGGAAGAAGCAAAGAGCACAGAGCACAG
GGCTGAAATTTGCACTAAAACCAACCATGTCTGATGGCTCAATTTTGCTGAGCACTGTAATTGTTGCTCCTGCTCCATCA
TCAATTCGGTCGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis