Browse Element(s) Details


Os.51521.1.S2_at

Description gb:AK106303.1
DB_XREF= gi:32991512
TID=Os.51521.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-101-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-101-C07, full insert sequence.
FL= gb:AK063675.1 gb:AK106303.1 gb:AK063001.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4398010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g43940Os.27468.1.S1_at11/116+26470846..26472966expressed protein
LOC_Os06g43950OsAffx.5098.1.S1_at11/116+26477482..26478274expressed protein
LOC_Os06g43960Os.53651.1.S1_at11/116+26481248..26482813expressed protein
LOC_Os06g43960Os.16254.1.S1_at2/116+26481248..26482813expressed protein
LOC_Os06g43970OsAffx.5099.1.S1_at10/116+26488450..26488888hypothetical protein
LOC_Os06g43980Os.51521.1.S1_at11/116+26490477..26493004expressed protein
LOC_Os06g43980Os.51521.1.S2_at10/116+26490477..26493004expressed protein
LOC_Os06g43980OsAffx.15916.1.S1_at1/116+26490477..26493004expressed protein
LOC_Os06g43990Os.16011.1.A1_at11/116+26495540..26497431expressed protein
LOC_Os06g44000OsAffx.28092.1.S1_at11/116+26499618..26500169hypothetical protein
LOC_Os06g44010Os.50015.1.S1_at11/116+26509009..26510702WRKY2 protein, putative, expressed
LOC_Os06g44020OsAffx.15917.1.S1_at11/116+26514060..26515821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51521.1.S2_at--263--8871Chr06:26490848..26490872 (25 bp)
TGATGATCACAAAAGCATGCTTGCT
LOC_Os06g43980
Os.51521.1.S2_at--311--3531Chr06:26490833..26490857 (25 bp)
CATGCTTGCTGTTGGACATTCAAGG
LOC_Os06g43980
Os.51521.1.S2_at--465--8131Chr06:26490820..26490844 (25 bp)
GGACATTCAAGGTGGCCATCTGATG
LOC_Os06g43980
Os.51521.1.S2_at--1017--4051Chr06:26490724..26490748 (25 bp)
CGATGATGATCAGCCTTTTCTGACA
LOC_Os06g43980
Os.51521.1.S2_at--38--1671Chr06:26490713..26490737 (25 bp)
AGCCTTTTCTGACAAGCATGCCTTT
LOC_Os06g43980
Os.51521.1.S2_at--831--8231Chr06:26490678..26490702 (25 bp)
GGCAGCTGAGGGTGTCAATTAGACT
LOC_Os06g43980
Os.51521.1.S2_at--373--1411Chr06:26490658..26490682 (25 bp)
AGACTTGATCCTATCATCTCTTGTG
LOC_Os06g43980
Os.51521.1.S2_at--963--451Chr06:26490643..26490667 (25 bp)
ATCTCTTGTGACCTATTCACTCACT
LOC_Os06g43980
Os.51521.1.S2_at--39--8211Chr06:26490566..26490590 (25 bp)
GGAAGGTCCACTTACATTAGGATGA
LOC_Os06g43980
Os.51521.1.S2_at--822--2251Chr06:26490487..26490511 (25 bp)
AAATCTGAGCCCACTTAGGCCTCTT
LOC_Os06g43980
Os.51521.1.S2_at--116--10091Chr06:26490477..26490496 (20 bp)
TAGGCCTCTTTTGGAGTGGAAAACA
NONE
Target Sequence 
TGATGATCACAAAAGCATGCTTGCTGTTGGACATTCAAGGTGGCCATCTGATGCCAAAGTACCTGGACCAACTTCTCCAG
AATGTTGGAAACATGGAATGGAATGTGAGAGTGTGGATGAGGGGCGATGATGATCAGCCTTTTCTGACAAGCATGCCTTT
GAAAAATCAAGGCAGCTGAGGGTGTCAATTAGACTTGATCCTATCATCTCTTGTGACCTATTCACTCACTAATGTTAGGT
GGTTCTTGCACCTAGGATGGTCATTCTGTTAATGATAACCAAGGAAGGTCCACTTACATTAGGATGAGTAGATTGTGGAG
CAAGATATATAGGGGTTGGGTCTGTATGATTGATCAAAGGCAAATCTGAGCCCACTTAGGCCTCTTTTGGAGTGGAAAAC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51521.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis