Browse Element(s) Details


Os.51549.1.S1_at

Description gb:AK063048.1
DB_XREF= gi:32973066
TID=Os.51549.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51549 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-110-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-110-E02, full insert sequence.
FL= gb:AK063048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g225801/11RhoGAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g22534Os.30694.3.S1_x_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.1.S1_at11/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.30694.2.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534OsAffx.22627.1.S1_at10/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.7923.1.S1_x_at6/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22534Os.32421.1.A1_at1/117+12674396..12682626WD-repeat protein 18, putative, expressed
LOC_Os07g22550OsAffx.22699.1.S1_x_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.16111.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.20615.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22550OsAffx.10039.1.S1_at1/117+12685933..12692416retrotransposon protein, putative, unclassified
LOC_Os07g22560OsAffx.22250.2.S1_x_at11/117+12692786..12695518hypothetical protein
LOC_Os07g22570Os.34643.1.S1_at11/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_s_at4/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570Os.29747.1.S1_at1/117+12697129..12698972retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580Os.32592.1.S1_at11/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22580Os.51549.1.S1_at1/117+12703673..12706326RhoGAP domain containing protein, expressed
LOC_Os07g22590OsAffx.16363.2.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_x_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.16363.1.S1_at11/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22590OsAffx.4116.1.S1_x_at1/117+12708674..12711669hAT family dimerisation domain containing protein
LOC_Os07g22600Os.4599.1.S1_at10/117+12714877..12721201Spermidine synthase 1, putative, expressed
LOC_Os07g22610Os.38395.3.S1_x_at11/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.2.S1_x_at9/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.4.S1_x_at4/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.1.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22610Os.38395.5.S1_at1/117+12721651..12728343transposon protein, putative, Mutator sub-class
LOC_Os07g22620NANA7+12729827..12734933retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
GO:0030675molecular_functionRac GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51549.1.S1_at--463--2111NONE
ACATGTCGAGACTGTCAGATCCTCT
NONE
Os.51549.1.S1_at--692--8731Chr07:12704166..12704520 (25 bp)
TGTCAGATCCTCTCGATGATGTGTC
LOC_Os07g22580
Os.51549.1.S1_at--703--7211NONE
GTCGAAAATTTCATATGCCATCCGT
NONE
Os.51549.1.S1_at--254--4431NONE
GCCATCCGTAGAAATTCATTCGCTA
NONE
Os.51549.1.S1_at--139--1171NONE
AGTCACTTCAAGTTCCGATCTTGTT
NONE
Os.51549.1.S1_at--185--4031NONE
CGATCTTGTTCGCTACGGATGTCGC
NONE
Os.51549.1.S1_at--927--7231NONE
GTCGCGTCACGAGGTTTGGATATTC
NONE
Os.51549.1.S1_at--289--8571NONE
TGGATATTCCCAGTGTCGATCTAAT
NONE
Os.51549.1.S1_at--1108--9131NONE
TGCGGTACTGCAATAACGCTCGTAA
NONE
Os.51549.1.S1_at--1139--5591NONE
GAAATTGCTCGTTGAAGTCTCCATG
NONE
Os.51549.1.S1_at--932--8991NONE
TGAAGTCTCCATGACTCGAAGTCAA
NONE
Target Sequence 
ACATGTCGAGACTGTCAGATCCTCTCGATGATGTGTCGAAAATTTCATATGCCATCCGTAGAAATTCATTCGCTAATGAA
ACAACGACAACGAATAGCGTCATTGGCAAAATTTAAGTCACTTCAAGTTCCGATCTTGTTCGCTACGGATGTCGCGTCAC
GAGGTTTGGATATTCCCAGTGTCGATCTAATTATTAATCACAACGTACCATTTGTACCAAAAGAATATGTACATCGAGTA
GGACGAACAGCTCGTGCAGGACGTTGCGGTACTGCAATAACGCTCGTAACACAGTATGACGTGAAATTGATGCATAAAAT
CGAAGATCGTGTTGGTAAACAATTAAGTGAATATCGCGTGAAAGAGAAAGACGTGCTGAAATTGCTCGTTGAAGTCTCCA
TGACTCGAAGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51549.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis